Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2668

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2667 and DvMF_2668 are separated by 279 nucleotidesDvMF_2668 and rnhA are separated by 90 nucleotidesrnhA and DvMF_2670 are separated by 119 nucleotides DvMF_2667: DvMF_2667 - hypothetical protein (RefSeq), at 3,369,866 to 3,370,837 _2667 DvMF_2668: DvMF_2668 - type IV pilus assembly PilZ (RefSeq), at 3,371,117 to 3,371,827 _2668 DvMF_2669: rnhA - ribonuclease H (RefSeq), at 3,371,918 to 3,372,388 rnhA DvMF_2670: DvMF_2670 - hypothetical protein (RefSeq), at 3,372,508 to 3,373,029 _2670 Position (kb) 3371 3372Strain fitness (log2 ratio) -2 -1 0 1at 3370.246 kb on - strand, within DvMF_2667at 3370.393 kb on + strand, within DvMF_2667at 3370.475 kb on + strand, within DvMF_2667at 3370.544 kb on - strand, within DvMF_2667at 3370.549 kb on - strand, within DvMF_2667at 3370.810 kb on + strandat 3370.811 kb on - strandat 3370.934 kb on - strandat 3371.022 kb on - strandat 3371.148 kb on + strandat 3371.172 kb on + strandat 3371.311 kb on + strand, within DvMF_2668at 3371.967 kb on - strand, within rnhAat 3372.188 kb on - strand, within rnhAat 3372.188 kb on - strand, within rnhAat 3372.195 kb on - strand, within rnhAat 3372.212 kb on - strand, within rnhAat 3372.265 kb on + strand, within rnhAat 3372.265 kb on + strand, within rnhAat 3372.533 kb on - strandat 3372.545 kb on - strandat 3372.628 kb on + strand, within DvMF_2670at 3372.710 kb on - strand, within DvMF_2670at 3372.725 kb on - strand, within DvMF_2670at 3372.759 kb on + strand, within DvMF_2670at 3372.767 kb on - strand, within DvMF_2670at 3372.767 kb on - strand, within DvMF_2670at 3372.767 kb on - strand, within DvMF_2670at 3372.767 kb on - strand, within DvMF_2670at 3372.767 kb on - strand, within DvMF_2670at 3372.785 kb on + strand, within DvMF_2670at 3372.787 kb on + strand, within DvMF_2670at 3372.793 kb on - strand, within DvMF_2670at 3372.806 kb on + strand, within DvMF_2670at 3372.812 kb on - strand, within DvMF_2670at 3372.821 kb on + strand, within DvMF_2670

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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3,370,246 - DvMF_2667 0.39 -0.0
3,370,393 + DvMF_2667 0.54 -0.1
3,370,475 + DvMF_2667 0.63 -0.3
3,370,544 - DvMF_2667 0.70 -0.3
3,370,549 - DvMF_2667 0.70 -1.7
3,370,810 + -0.0
3,370,811 - -0.6
3,370,934 - -0.5
3,371,022 - -2.3
3,371,148 + +0.6
3,371,172 + +0.4
3,371,311 + DvMF_2668 0.27 +0.7
3,371,967 - rnhA DvMF_2669 0.10 -1.6
3,372,188 - rnhA DvMF_2669 0.57 -0.5
3,372,188 - rnhA DvMF_2669 0.57 -2.7
3,372,195 - rnhA DvMF_2669 0.59 -0.5
3,372,212 - rnhA DvMF_2669 0.62 -1.2
3,372,265 + rnhA DvMF_2669 0.74 -0.2
3,372,265 + rnhA DvMF_2669 0.74 -2.7
3,372,533 - -0.2
3,372,545 - -0.7
3,372,628 + DvMF_2670 0.23 -0.5
3,372,710 - DvMF_2670 0.39 -1.1
3,372,725 - DvMF_2670 0.42 +0.1
3,372,759 + DvMF_2670 0.48 -0.9
3,372,767 - DvMF_2670 0.50 +0.2
3,372,767 - DvMF_2670 0.50 -0.8
3,372,767 - DvMF_2670 0.50 -0.4
3,372,767 - DvMF_2670 0.50 -0.4
3,372,767 - DvMF_2670 0.50 +0.5
3,372,785 + DvMF_2670 0.53 +0.9
3,372,787 + DvMF_2670 0.53 -0.2
3,372,793 - DvMF_2670 0.55 -0.7
3,372,806 + DvMF_2670 0.57 -1.6
3,372,812 - DvMF_2670 0.58 -0.3
3,372,821 + DvMF_2670 0.60 -0.7

Or see this region's nucleotide sequence