Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2667 and DvMF_2668 are separated by 279 nucleotides DvMF_2668 and rnhA are separated by 90 nucleotides rnhA and DvMF_2670 are separated by 119 nucleotides
DvMF_2667: DvMF_2667 - hypothetical protein (RefSeq), at 3,369,866 to 3,370,837
_2667
DvMF_2668: DvMF_2668 - type IV pilus assembly PilZ (RefSeq), at 3,371,117 to 3,371,827
_2668
DvMF_2669: rnhA - ribonuclease H (RefSeq), at 3,371,918 to 3,372,388
rnhA
DvMF_2670: DvMF_2670 - hypothetical protein (RefSeq), at 3,372,508 to 3,373,029
_2670
Position (kb)
3371
3372 Strain fitness (log2 ratio)
-2
-1
0
1 at 3370.246 kb on - strand, within DvMF_2667 at 3370.393 kb on + strand, within DvMF_2667 at 3370.475 kb on + strand, within DvMF_2667 at 3370.544 kb on - strand, within DvMF_2667 at 3370.549 kb on - strand, within DvMF_2667 at 3370.810 kb on + strand at 3370.811 kb on - strand at 3370.934 kb on - strand at 3371.022 kb on - strand at 3371.148 kb on + strand at 3371.172 kb on + strand at 3371.311 kb on + strand, within DvMF_2668 at 3371.967 kb on - strand, within rnhA at 3372.188 kb on - strand, within rnhA at 3372.188 kb on - strand, within rnhA at 3372.195 kb on - strand, within rnhA at 3372.212 kb on - strand, within rnhA at 3372.265 kb on + strand, within rnhA at 3372.265 kb on + strand, within rnhA at 3372.533 kb on - strand at 3372.545 kb on - strand at 3372.628 kb on + strand, within DvMF_2670 at 3372.710 kb on - strand, within DvMF_2670 at 3372.725 kb on - strand, within DvMF_2670 at 3372.759 kb on + strand, within DvMF_2670 at 3372.767 kb on - strand, within DvMF_2670 at 3372.767 kb on - strand, within DvMF_2670 at 3372.767 kb on - strand, within DvMF_2670 at 3372.767 kb on - strand, within DvMF_2670 at 3372.767 kb on - strand, within DvMF_2670 at 3372.785 kb on + strand, within DvMF_2670 at 3372.787 kb on + strand, within DvMF_2670 at 3372.793 kb on - strand, within DvMF_2670 at 3372.806 kb on + strand, within DvMF_2670 at 3372.812 kb on - strand, within DvMF_2670 at 3372.821 kb on + strand, within DvMF_2670
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 3,370,246 - DvMF_2667 0.39 -0.0 3,370,393 + DvMF_2667 0.54 -0.1 3,370,475 + DvMF_2667 0.63 -0.3 3,370,544 - DvMF_2667 0.70 -0.3 3,370,549 - DvMF_2667 0.70 -1.7 3,370,810 + -0.0 3,370,811 - -0.6 3,370,934 - -0.5 3,371,022 - -2.3 3,371,148 + +0.6 3,371,172 + +0.4 3,371,311 + DvMF_2668 0.27 +0.7 3,371,967 - rnhA DvMF_2669 0.10 -1.6 3,372,188 - rnhA DvMF_2669 0.57 -0.5 3,372,188 - rnhA DvMF_2669 0.57 -2.7 3,372,195 - rnhA DvMF_2669 0.59 -0.5 3,372,212 - rnhA DvMF_2669 0.62 -1.2 3,372,265 + rnhA DvMF_2669 0.74 -0.2 3,372,265 + rnhA DvMF_2669 0.74 -2.7 3,372,533 - -0.2 3,372,545 - -0.7 3,372,628 + DvMF_2670 0.23 -0.5 3,372,710 - DvMF_2670 0.39 -1.1 3,372,725 - DvMF_2670 0.42 +0.1 3,372,759 + DvMF_2670 0.48 -0.9 3,372,767 - DvMF_2670 0.50 +0.2 3,372,767 - DvMF_2670 0.50 -0.8 3,372,767 - DvMF_2670 0.50 -0.4 3,372,767 - DvMF_2670 0.50 -0.4 3,372,767 - DvMF_2670 0.50 +0.5 3,372,785 + DvMF_2670 0.53 +0.9 3,372,787 + DvMF_2670 0.53 -0.2 3,372,793 - DvMF_2670 0.55 -0.7 3,372,806 + DvMF_2670 0.57 -1.6 3,372,812 - DvMF_2670 0.58 -0.3 3,372,821 + DvMF_2670 0.60 -0.7
Or see this region's nucleotide sequence