Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2583 and DvMF_2584 are separated by 3 nucleotides DvMF_2584 and DvMF_2585 are separated by 447 nucleotides DvMF_2585 and DvMF_2586 are separated by 46 nucleotides
DvMF_2583: DvMF_2583 - dihydroxyacetone kinase, L subunit (RefSeq), at 3,267,361 to 3,267,993
_2583
DvMF_2584: DvMF_2584 - phosphoenolpyruvate-protein phosphotransferase (RefSeq), at 3,267,997 to 3,270,537
_2584
DvMF_2585: DvMF_2585 - anti-sigma-28 factor, FlgM (RefSeq), at 3,270,985 to 3,271,296
_2585
DvMF_2586: DvMF_2586 - hypothetical protein (RefSeq), at 3,271,343 to 3,271,759
_2586
Position (kb)
3267
3268
3269
3270
3271 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3267.001 kb on - strand at 3267.001 kb on - strand at 3267.138 kb on - strand at 3267.501 kb on - strand, within DvMF_2583 at 3267.643 kb on - strand, within DvMF_2583 at 3267.934 kb on + strand at 3268.211 kb on - strand at 3268.213 kb on + strand at 3268.269 kb on + strand, within DvMF_2584 at 3268.349 kb on - strand, within DvMF_2584 at 3268.371 kb on - strand, within DvMF_2584 at 3268.416 kb on + strand, within DvMF_2584 at 3268.597 kb on + strand, within DvMF_2584 at 3268.918 kb on - strand, within DvMF_2584 at 3269.594 kb on - strand, within DvMF_2584 at 3269.714 kb on - strand, within DvMF_2584 at 3269.918 kb on + strand, within DvMF_2584 at 3270.017 kb on - strand, within DvMF_2584 at 3270.204 kb on - strand, within DvMF_2584 at 3270.258 kb on + strand, within DvMF_2584 at 3270.308 kb on - strand at 3270.444 kb on - strand at 3270.469 kb on - strand at 3270.928 kb on - strand at 3271.141 kb on + strand, within DvMF_2585 at 3271.250 kb on - strand, within DvMF_2585 at 3271.261 kb on - strand, within DvMF_2585 at 3271.341 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 3,267,001 - -1.0 3,267,001 - -0.8 3,267,138 - -0.6 3,267,501 - DvMF_2583 0.22 -1.9 3,267,643 - DvMF_2583 0.45 -1.9 3,267,934 + -2.7 3,268,211 - -3.0 3,268,213 + -1.3 3,268,269 + DvMF_2584 0.11 -1.1 3,268,349 - DvMF_2584 0.14 -3.2 3,268,371 - DvMF_2584 0.15 -3.6 3,268,416 + DvMF_2584 0.16 -2.9 3,268,597 + DvMF_2584 0.24 -1.9 3,268,918 - DvMF_2584 0.36 -2.3 3,269,594 - DvMF_2584 0.63 -2.1 3,269,714 - DvMF_2584 0.68 -1.2 3,269,918 + DvMF_2584 0.76 -2.6 3,270,017 - DvMF_2584 0.79 -2.4 3,270,204 - DvMF_2584 0.87 -1.9 3,270,258 + DvMF_2584 0.89 -1.8 3,270,308 - -0.6 3,270,444 - -3.3 3,270,469 - -1.9 3,270,928 - -0.7 3,271,141 + DvMF_2585 0.50 -0.1 3,271,250 - DvMF_2585 0.85 -0.9 3,271,261 - DvMF_2585 0.88 -0.1 3,271,341 + -0.4
Or see this region's nucleotide sequence