Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2567 and DvMF_2568 are separated by 97 nucleotides DvMF_2568 and DvMF_2569 are separated by 661 nucleotides
DvMF_2567: DvMF_2567 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,244,529 to 3,245,698
_2567
DvMF_2568: DvMF_2568 - filamentation induced by cAMP protein Fic (RefSeq), at 3,245,796 to 3,247,028
_2568
DvMF_2569: DvMF_2569 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 3,247,690 to 3,248,673
_2569
Position (kb)
3245
3246
3247
3248 Strain fitness (log2 ratio)
-2
-1
0
1 at 3244.834 kb on + strand, within DvMF_2567 at 3244.869 kb on + strand, within DvMF_2567 at 3244.909 kb on + strand, within DvMF_2567 at 3244.941 kb on - strand, within DvMF_2567 at 3244.970 kb on + strand, within DvMF_2567 at 3245.001 kb on + strand, within DvMF_2567 at 3245.268 kb on + strand, within DvMF_2567 at 3245.460 kb on - strand, within DvMF_2567 at 3245.653 kb on + strand at 3245.791 kb on + strand at 3245.855 kb on + strand at 3245.855 kb on + strand at 3245.878 kb on - strand at 3245.915 kb on - strand at 3245.977 kb on - strand, within DvMF_2568 at 3246.247 kb on + strand, within DvMF_2568 at 3246.516 kb on + strand, within DvMF_2568 at 3246.630 kb on - strand, within DvMF_2568 at 3246.716 kb on + strand, within DvMF_2568 at 3246.972 kb on + strand at 3246.991 kb on + strand at 3247.361 kb on + strand at 3247.708 kb on + strand at 3247.840 kb on + strand, within DvMF_2569 at 3247.959 kb on + strand, within DvMF_2569 at 3248.023 kb on + strand, within DvMF_2569
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 3,244,834 + DvMF_2567 0.26 -1.9 3,244,869 + DvMF_2567 0.29 -0.4 3,244,909 + DvMF_2567 0.32 -0.5 3,244,941 - DvMF_2567 0.35 -0.1 3,244,970 + DvMF_2567 0.38 -0.5 3,245,001 + DvMF_2567 0.40 -0.7 3,245,268 + DvMF_2567 0.63 -0.5 3,245,460 - DvMF_2567 0.80 -1.6 3,245,653 + -0.7 3,245,791 + -1.7 3,245,855 + -0.6 3,245,855 + -1.0 3,245,878 - -0.3 3,245,915 - -2.1 3,245,977 - DvMF_2568 0.15 -0.4 3,246,247 + DvMF_2568 0.37 +0.4 3,246,516 + DvMF_2568 0.58 +0.8 3,246,630 - DvMF_2568 0.68 -0.5 3,246,716 + DvMF_2568 0.75 -0.6 3,246,972 + -1.5 3,246,991 + -0.6 3,247,361 + +0.0 3,247,708 + -0.6 3,247,840 + DvMF_2569 0.15 -0.9 3,247,959 + DvMF_2569 0.27 -1.7 3,248,023 + DvMF_2569 0.34 -1.0
Or see this region's nucleotide sequence