Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2455

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2454 and DvMF_2455 are separated by 149 nucleotidesDvMF_2455 and DvMF_2456 are separated by 154 nucleotides DvMF_2454: DvMF_2454 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 3,096,204 to 3,098,195 _2454 DvMF_2455: DvMF_2455 - hemerythrin-like metal-binding protein (RefSeq), at 3,098,345 to 3,098,800 _2455 DvMF_2456: DvMF_2456 - exodeoxyribonuclease III (RefSeq), at 3,098,955 to 3,099,734 _2456 Position (kb) 3098 3099Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3097.509 kb on - strand, within DvMF_2454at 3097.938 kb on + strand, within DvMF_2454at 3098.000 kb on + strandat 3098.046 kb on - strandat 3098.433 kb on - strand, within DvMF_2455at 3098.613 kb on + strand, within DvMF_2455at 3098.676 kb on - strand, within DvMF_2455at 3098.788 kb on + strandat 3098.808 kb on + strandat 3099.121 kb on - strand, within DvMF_2456at 3099.219 kb on - strand, within DvMF_2456at 3099.404 kb on + strand, within DvMF_2456at 3099.412 kb on - strand, within DvMF_2456at 3099.493 kb on - strand, within DvMF_2456at 3099.530 kb on - strand, within DvMF_2456at 3099.537 kb on + strand, within DvMF_2456at 3099.545 kb on - strand, within DvMF_2456at 3099.560 kb on - strand, within DvMF_2456

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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3,097,509 - DvMF_2454 0.66 +0.4
3,097,938 + DvMF_2454 0.87 +2.4
3,098,000 + +1.8
3,098,046 - +1.2
3,098,433 - DvMF_2455 0.19 -3.7
3,098,613 + DvMF_2455 0.59 -2.0
3,098,676 - DvMF_2455 0.73 -0.8
3,098,788 + -1.1
3,098,808 + -0.3
3,099,121 - DvMF_2456 0.21 -1.8
3,099,219 - DvMF_2456 0.34 -1.0
3,099,404 + DvMF_2456 0.58 -1.5
3,099,412 - DvMF_2456 0.59 -1.8
3,099,493 - DvMF_2456 0.69 -0.8
3,099,530 - DvMF_2456 0.74 -1.8
3,099,537 + DvMF_2456 0.75 -1.9
3,099,545 - DvMF_2456 0.76 +0.1
3,099,560 - DvMF_2456 0.78 -1.1

Or see this region's nucleotide sequence