Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2411 and DvMF_2412 are separated by 60 nucleotides DvMF_2412 and DvMF_2413 are separated by 6 nucleotides DvMF_2413 and DvMF_2414 are separated by 7 nucleotides
DvMF_2411: DvMF_2411 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,049,838 to 3,051,172
_2411
DvMF_2412: DvMF_2412 - type III secretion protein, YscU/HrpY family (RefSeq), at 3,051,233 to 3,052,273
_2412
DvMF_2413: DvMF_2413 - type III secretion protein SpaR/YscT/HrcT (RefSeq), at 3,052,280 to 3,053,116
_2413
DvMF_2414: DvMF_2414 - type III secretion protein, HrpO family (RefSeq), at 3,053,124 to 3,053,384
_2414
Position (kb)
3051
3052
3053 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3050.269 kb on - strand, within DvMF_2411 at 3050.295 kb on + strand, within DvMF_2411 at 3050.460 kb on + strand, within DvMF_2411 at 3050.542 kb on + strand, within DvMF_2411 at 3050.696 kb on + strand, within DvMF_2411 at 3050.910 kb on + strand, within DvMF_2411 at 3051.112 kb on - strand at 3051.260 kb on + strand at 3051.279 kb on + strand at 3051.287 kb on - strand at 3051.287 kb on - strand at 3051.300 kb on - strand at 3051.461 kb on + strand, within DvMF_2412 at 3051.510 kb on - strand, within DvMF_2412 at 3051.537 kb on - strand, within DvMF_2412 at 3051.578 kb on - strand, within DvMF_2412 at 3051.666 kb on + strand, within DvMF_2412 at 3051.736 kb on - strand, within DvMF_2412 at 3051.972 kb on - strand, within DvMF_2412 at 3051.990 kb on + strand, within DvMF_2412 at 3052.454 kb on + strand, within DvMF_2413 at 3052.489 kb on + strand, within DvMF_2413 at 3052.542 kb on + strand, within DvMF_2413 at 3052.558 kb on + strand, within DvMF_2413 at 3052.922 kb on - strand, within DvMF_2413 at 3052.927 kb on + strand, within DvMF_2413 at 3053.043 kb on + strand at 3053.089 kb on - strand at 3053.098 kb on - strand at 3053.213 kb on + strand, within DvMF_2414 at 3053.213 kb on + strand, within DvMF_2414 at 3053.239 kb on - strand, within DvMF_2414
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 3,050,269 - DvMF_2411 0.32 -2.5 3,050,295 + DvMF_2411 0.34 -2.4 3,050,460 + DvMF_2411 0.47 -0.9 3,050,542 + DvMF_2411 0.53 +0.0 3,050,696 + DvMF_2411 0.64 -0.7 3,050,910 + DvMF_2411 0.80 -0.6 3,051,112 - -0.0 3,051,260 + -0.8 3,051,279 + -0.8 3,051,287 - -0.3 3,051,287 - -0.6 3,051,300 - -0.9 3,051,461 + DvMF_2412 0.22 -0.5 3,051,510 - DvMF_2412 0.27 +0.3 3,051,537 - DvMF_2412 0.29 -0.4 3,051,578 - DvMF_2412 0.33 -0.6 3,051,666 + DvMF_2412 0.42 -0.1 3,051,736 - DvMF_2412 0.48 +0.8 3,051,972 - DvMF_2412 0.71 -0.9 3,051,990 + DvMF_2412 0.73 -1.9 3,052,454 + DvMF_2413 0.21 -0.3 3,052,489 + DvMF_2413 0.25 -1.3 3,052,542 + DvMF_2413 0.31 -0.4 3,052,558 + DvMF_2413 0.33 +0.4 3,052,922 - DvMF_2413 0.77 -0.5 3,052,927 + DvMF_2413 0.77 -2.9 3,053,043 + -0.3 3,053,089 - -0.2 3,053,098 - +0.6 3,053,213 + DvMF_2414 0.34 -0.9 3,053,213 + DvMF_2414 0.34 -4.2 3,053,239 - DvMF_2414 0.44 -0.0
Or see this region's nucleotide sequence