Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2365

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2364 and DvMF_2365 are separated by 611 nucleotidesDvMF_2365 and DvMF_2366 are separated by 212 nucleotides DvMF_2364: DvMF_2364 - protein TolQ (RefSeq), at 2,984,250 to 2,984,945 _2364 DvMF_2365: DvMF_2365 - outer membrane efflux protein (RefSeq), at 2,985,557 to 2,987,005 _2365 DvMF_2366: DvMF_2366 - ferric uptake regulator, Fur family (RefSeq), at 2,987,218 to 2,987,613 _2366 Position (kb) 2985 2986 2987 2988Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2984.980 kb on - strandat 2985.052 kb on + strandat 2985.057 kb on + strandat 2985.082 kb on + strandat 2985.095 kb on - strandat 2985.105 kb on - strandat 2985.189 kb on + strandat 2985.197 kb on - strandat 2985.645 kb on + strandat 2985.645 kb on + strandat 2985.658 kb on - strandat 2985.658 kb on - strandat 2986.082 kb on + strand, within DvMF_2365at 2986.090 kb on - strand, within DvMF_2365at 2986.134 kb on - strand, within DvMF_2365at 2986.259 kb on - strand, within DvMF_2365at 2986.285 kb on - strand, within DvMF_2365at 2986.566 kb on - strand, within DvMF_2365at 2986.646 kb on + strand, within DvMF_2365at 2986.665 kb on - strand, within DvMF_2365at 2986.739 kb on + strand, within DvMF_2365at 2986.863 kb on - strandat 2986.913 kb on + strandat 2986.999 kb on + strandat 2987.032 kb on - strandat 2987.124 kb on + strandat 2987.350 kb on - strand, within DvMF_2366at 2987.639 kb on - strandat 2987.670 kb on - strandat 2987.715 kb on + strandat 2987.762 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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2,984,980 - -1.1
2,985,052 + -0.5
2,985,057 + -1.3
2,985,082 + -2.7
2,985,095 - -0.2
2,985,105 - +1.1
2,985,189 + +1.4
2,985,197 - -1.3
2,985,645 + -2.4
2,985,645 + -3.9
2,985,658 - -2.9
2,985,658 - -4.9
2,986,082 + DvMF_2365 0.36 -6.4
2,986,090 - DvMF_2365 0.37 -2.9
2,986,134 - DvMF_2365 0.40 -3.8
2,986,259 - DvMF_2365 0.48 -2.3
2,986,285 - DvMF_2365 0.50 -4.8
2,986,566 - DvMF_2365 0.70 -5.4
2,986,646 + DvMF_2365 0.75 -4.2
2,986,665 - DvMF_2365 0.76 -2.1
2,986,739 + DvMF_2365 0.82 -5.4
2,986,863 - -2.9
2,986,913 + -3.2
2,986,999 + -1.0
2,987,032 - +0.9
2,987,124 + -0.7
2,987,350 - DvMF_2366 0.33 -0.5
2,987,639 - -0.9
2,987,670 - -0.4
2,987,715 + +0.6
2,987,762 + -1.0

Or see this region's nucleotide sequence