Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2325 and DvMF_2326 are separated by 288 nucleotides DvMF_2326 and DvMF_2327 are separated by 211 nucleotides
DvMF_2325: DvMF_2325 - ectoine/hydroxyectoine ABC transporter solute-binding protein (RefSeq), at 2,929,640 to 2,930,539
_2325
DvMF_2326: DvMF_2326 - TPR repeat-containing protein (RefSeq), at 2,930,828 to 2,931,592
_2326
DvMF_2327: DvMF_2327 - pyridine nucleotide-disulfide oxidoreductase family protein (RefSeq), at 2,931,804 to 2,933,087
_2327
Position (kb)
2930
2931
2932 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2929.916 kb on + strand, within DvMF_2325 at 2929.939 kb on + strand, within DvMF_2325 at 2929.947 kb on - strand, within DvMF_2325 at 2930.009 kb on - strand, within DvMF_2325 at 2930.068 kb on + strand, within DvMF_2325 at 2930.076 kb on - strand, within DvMF_2325 at 2930.284 kb on - strand, within DvMF_2325 at 2930.489 kb on - strand at 2930.612 kb on - strand at 2930.705 kb on + strand at 2930.713 kb on - strand at 2931.200 kb on + strand, within DvMF_2326 at 2931.503 kb on + strand, within DvMF_2326 at 2931.582 kb on + strand at 2931.590 kb on - strand at 2931.612 kb on + strand at 2931.620 kb on - strand at 2931.690 kb on + strand at 2931.768 kb on + strand at 2931.773 kb on + strand at 2931.788 kb on + strand at 2932.090 kb on - strand, within DvMF_2327 at 2932.094 kb on + strand, within DvMF_2327 at 2932.134 kb on + strand, within DvMF_2327 at 2932.139 kb on + strand, within DvMF_2327 at 2932.183 kb on + strand, within DvMF_2327 at 2932.191 kb on - strand, within DvMF_2327 at 2932.256 kb on - strand, within DvMF_2327 at 2932.345 kb on + strand, within DvMF_2327 at 2932.390 kb on + strand, within DvMF_2327 at 2932.543 kb on + strand, within DvMF_2327 at 2932.571 kb on - strand, within DvMF_2327
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 2,929,916 + DvMF_2325 0.31 +0.4 2,929,939 + DvMF_2325 0.33 -0.5 2,929,947 - DvMF_2325 0.34 -2.8 2,930,009 - DvMF_2325 0.41 -0.2 2,930,068 + DvMF_2325 0.48 -0.1 2,930,076 - DvMF_2325 0.48 -1.0 2,930,284 - DvMF_2325 0.72 -0.8 2,930,489 - -0.8 2,930,612 - -0.7 2,930,705 + -0.8 2,930,713 - -0.1 2,931,200 + DvMF_2326 0.49 -0.2 2,931,503 + DvMF_2326 0.88 -0.4 2,931,582 + -0.7 2,931,590 - -0.7 2,931,612 + -1.7 2,931,620 - +0.6 2,931,690 + +0.9 2,931,768 + -1.6 2,931,773 + -0.6 2,931,788 + -0.8 2,932,090 - DvMF_2327 0.22 +0.0 2,932,094 + DvMF_2327 0.23 -1.2 2,932,134 + DvMF_2327 0.26 -0.8 2,932,139 + DvMF_2327 0.26 -0.2 2,932,183 + DvMF_2327 0.30 -2.3 2,932,191 - DvMF_2327 0.30 -0.3 2,932,256 - DvMF_2327 0.35 -0.1 2,932,345 + DvMF_2327 0.42 -1.0 2,932,390 + DvMF_2327 0.46 -0.0 2,932,543 + DvMF_2327 0.58 -0.2 2,932,571 - DvMF_2327 0.60 -0.5
Or see this region's nucleotide sequence