Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2282

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2281 and DvMF_2282 are separated by 635 nucleotidesDvMF_2282 and DvMF_2283 are separated by 231 nucleotides DvMF_2281: DvMF_2281 - transcriptional regulator, ArsR family (RefSeq), at 2,869,587 to 2,869,955 _2281 DvMF_2282: DvMF_2282 - permease (RefSeq), at 2,870,591 to 2,871,583 _2282 DvMF_2283: DvMF_2283 - TPR repeat-containing protein (RefSeq), at 2,871,815 to 2,872,375 _2283 Position (kb) 2870 2871 2872Strain fitness (log2 ratio) -3 -2 -1 0 1at 2869.994 kb on - strandat 2870.205 kb on - strandat 2870.236 kb on + strandat 2870.513 kb on - strandat 2870.633 kb on - strandat 2870.727 kb on + strand, within DvMF_2282at 2870.727 kb on + strand, within DvMF_2282at 2870.779 kb on - strand, within DvMF_2282at 2870.962 kb on - strand, within DvMF_2282at 2871.156 kb on + strand, within DvMF_2282at 2871.166 kb on + strand, within DvMF_2282at 2871.169 kb on - strand, within DvMF_2282at 2871.169 kb on - strand, within DvMF_2282at 2871.179 kb on - strand, within DvMF_2282at 2871.239 kb on + strand, within DvMF_2282at 2871.385 kb on - strand, within DvMF_2282at 2871.636 kb on + strandat 2871.636 kb on + strandat 2871.636 kb on + strandat 2871.644 kb on - strandat 2872.200 kb on + strand, within DvMF_2283at 2872.406 kb on + strandat 2872.495 kb on - strandat 2872.495 kb on - strandat 2872.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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2,869,994 - -1.0
2,870,205 - -0.7
2,870,236 + -0.2
2,870,513 - -0.9
2,870,633 - +1.4
2,870,727 + DvMF_2282 0.14 -1.2
2,870,727 + DvMF_2282 0.14 -0.8
2,870,779 - DvMF_2282 0.19 -0.5
2,870,962 - DvMF_2282 0.37 -0.9
2,871,156 + DvMF_2282 0.57 -0.9
2,871,166 + DvMF_2282 0.58 +0.3
2,871,169 - DvMF_2282 0.58 -1.0
2,871,169 - DvMF_2282 0.58 -0.4
2,871,179 - DvMF_2282 0.59 +0.7
2,871,239 + DvMF_2282 0.65 +0.3
2,871,385 - DvMF_2282 0.80 +1.2
2,871,636 + -0.6
2,871,636 + -0.6
2,871,636 + -0.7
2,871,644 - -0.3
2,872,200 + DvMF_2283 0.69 -0.5
2,872,406 + -0.7
2,872,495 - -3.0
2,872,495 - -0.1
2,872,559 + +0.0

Or see this region's nucleotide sequence