Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2008

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2006 and DvMF_2007 are separated by 288 nucleotidesDvMF_2007 and DvMF_2008 are separated by 72 nucleotidesDvMF_2008 and DvMF_2009 are separated by 210 nucleotides DvMF_2006: DvMF_2006 - D-galactarate dehydratase/altronate hydrolase-like protein (RefSeq), at 2,486,943 to 2,487,227 _2006 DvMF_2007: DvMF_2007 - hypothetical protein (RefSeq), at 2,487,516 to 2,487,932 _2007 DvMF_2008: DvMF_2008 - hypothetical protein (RefSeq), at 2,488,005 to 2,488,334 _2008 DvMF_2009: DvMF_2009 - flagellar basal body-associated protein FliL (RefSeq), at 2,488,545 to 2,489,330 _2009 Position (kb) 2488 2489Strain fitness (log2 ratio) -1 0 1at 2487.539 kb on + strandat 2487.581 kb on + strand, within DvMF_2007at 2487.589 kb on - strand, within DvMF_2007at 2487.683 kb on - strand, within DvMF_2007at 2487.695 kb on + strand, within DvMF_2007at 2487.707 kb on + strand, within DvMF_2007at 2487.820 kb on + strand, within DvMF_2007at 2487.828 kb on - strand, within DvMF_2007at 2487.833 kb on + strand, within DvMF_2007at 2487.965 kb on + strandat 2488.002 kb on - strandat 2488.152 kb on + strand, within DvMF_2008at 2488.460 kb on + strandat 2488.480 kb on - strandat 2488.679 kb on - strand, within DvMF_2009at 2488.689 kb on + strand, within DvMF_2009at 2488.806 kb on + strand, within DvMF_2009at 2488.819 kb on - strand, within DvMF_2009at 2488.860 kb on - strand, within DvMF_2009at 2488.910 kb on - strand, within DvMF_2009at 2489.098 kb on - strand, within DvMF_2009at 2489.105 kb on - strand, within DvMF_2009at 2489.317 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
remove
2,487,539 + -1.1
2,487,581 + DvMF_2007 0.16 -0.9
2,487,589 - DvMF_2007 0.18 -1.0
2,487,683 - DvMF_2007 0.40 -0.5
2,487,695 + DvMF_2007 0.43 +0.1
2,487,707 + DvMF_2007 0.46 -0.3
2,487,820 + DvMF_2007 0.73 -0.3
2,487,828 - DvMF_2007 0.75 -0.2
2,487,833 + DvMF_2007 0.76 -0.5
2,487,965 + +0.5
2,488,002 - -0.6
2,488,152 + DvMF_2008 0.45 -0.9
2,488,460 + -1.5
2,488,480 - -0.6
2,488,679 - DvMF_2009 0.17 +0.7
2,488,689 + DvMF_2009 0.18 +0.4
2,488,806 + DvMF_2009 0.33 +0.9
2,488,819 - DvMF_2009 0.35 +0.5
2,488,860 - DvMF_2009 0.40 +0.7
2,488,910 - DvMF_2009 0.46 +0.4
2,489,098 - DvMF_2009 0.70 +0.4
2,489,105 - DvMF_2009 0.71 +0.1
2,489,317 + -0.8

Or see this region's nucleotide sequence