Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1988

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1987 and DvMF_1988 are separated by 133 nucleotidesDvMF_1988 and DvMF_1989 are separated by 334 nucleotides DvMF_1987: DvMF_1987 - Pyruvate, water dikinase (RefSeq), at 2,459,260 to 2,462,016 _1987 DvMF_1988: DvMF_1988 - response regulator receiver protein (RefSeq), at 2,462,150 to 2,462,509 _1988 DvMF_1989: DvMF_1989 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,462,844 to 2,464,544 _1989 Position (kb) 2462 2463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2461.171 kb on - strand, within DvMF_1987at 2461.183 kb on + strand, within DvMF_1987at 2461.191 kb on - strand, within DvMF_1987at 2461.247 kb on - strand, within DvMF_1987at 2461.600 kb on - strand, within DvMF_1987at 2461.733 kb on + strand, within DvMF_1987at 2461.949 kb on + strandat 2461.962 kb on - strandat 2462.431 kb on + strand, within DvMF_1988at 2462.439 kb on - strand, within DvMF_1988at 2462.692 kb on + strandat 2462.757 kb on - strandat 2462.814 kb on - strandat 2462.861 kb on + strandat 2462.868 kb on - strandat 2463.030 kb on - strand, within DvMF_1989at 2463.030 kb on - strand, within DvMF_1989at 2463.141 kb on - strand, within DvMF_1989at 2463.174 kb on - strand, within DvMF_1989at 2463.267 kb on + strand, within DvMF_1989at 2463.314 kb on + strand, within DvMF_1989

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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2,461,171 - DvMF_1987 0.69 -4.0
2,461,183 + DvMF_1987 0.70 -2.3
2,461,191 - DvMF_1987 0.70 -2.9
2,461,247 - DvMF_1987 0.72 -3.1
2,461,600 - DvMF_1987 0.85 -2.0
2,461,733 + DvMF_1987 0.90 -2.4
2,461,949 + -1.5
2,461,962 - -1.4
2,462,431 + DvMF_1988 0.78 -0.1
2,462,439 - DvMF_1988 0.80 -0.5
2,462,692 + -0.4
2,462,757 - -0.7
2,462,814 - -0.7
2,462,861 + -0.4
2,462,868 - -1.2
2,463,030 - DvMF_1989 0.11 -0.8
2,463,030 - DvMF_1989 0.11 -1.2
2,463,141 - DvMF_1989 0.17 -0.5
2,463,174 - DvMF_1989 0.19 -0.4
2,463,267 + DvMF_1989 0.25 -1.3
2,463,314 + DvMF_1989 0.28 +0.4

Or see this region's nucleotide sequence