Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1869

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1868 and DvMF_1869 are separated by 235 nucleotidesDvMF_1869 and DvMF_1870 are separated by 223 nucleotides DvMF_1868: DvMF_1868 - protein of unknown function DUF162 (RefSeq), at 2,292,001 to 2,294,151 _1868 DvMF_1869: DvMF_1869 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 2,294,387 to 2,296,210 _1869 DvMF_1870: DvMF_1870 - protein of unknown function DUF362 (RefSeq), at 2,296,434 to 2,297,339 _1870 Position (kb) 2294 2295 2296 2297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2293.481 kb on - strand, within DvMF_1868at 2293.640 kb on + strand, within DvMF_1868at 2293.640 kb on + strand, within DvMF_1868at 2293.648 kb on - strand, within DvMF_1868at 2293.990 kb on + strandat 2293.997 kb on + strandat 2293.998 kb on - strandat 2294.291 kb on - strandat 2294.348 kb on + strandat 2294.788 kb on + strand, within DvMF_1869at 2294.928 kb on + strand, within DvMF_1869at 2295.004 kb on + strand, within DvMF_1869at 2295.521 kb on - strand, within DvMF_1869at 2295.663 kb on + strand, within DvMF_1869at 2295.865 kb on + strand, within DvMF_1869at 2296.024 kb on + strand, within DvMF_1869at 2296.403 kb on - strandat 2296.468 kb on + strandat 2296.546 kb on + strand, within DvMF_1870at 2296.719 kb on - strand, within DvMF_1870at 2296.795 kb on + strand, within DvMF_1870at 2297.048 kb on + strand, within DvMF_1870at 2297.056 kb on - strand, within DvMF_1870

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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2,293,481 - DvMF_1868 0.69 +1.0
2,293,640 + DvMF_1868 0.76 -0.3
2,293,640 + DvMF_1868 0.76 -0.3
2,293,648 - DvMF_1868 0.77 -1.0
2,293,990 + -0.7
2,293,997 + -0.0
2,293,998 - -3.3
2,294,291 - -0.8
2,294,348 + -0.9
2,294,788 + DvMF_1869 0.22 +1.9
2,294,928 + DvMF_1869 0.30 -0.7
2,295,004 + DvMF_1869 0.34 -2.2
2,295,521 - DvMF_1869 0.62 +0.1
2,295,663 + DvMF_1869 0.70 +0.4
2,295,865 + DvMF_1869 0.81 -0.7
2,296,024 + DvMF_1869 0.90 -1.3
2,296,403 - -0.7
2,296,468 + -1.1
2,296,546 + DvMF_1870 0.12 +0.2
2,296,719 - DvMF_1870 0.31 +0.2
2,296,795 + DvMF_1870 0.40 +0.8
2,297,048 + DvMF_1870 0.68 -2.1
2,297,056 - DvMF_1870 0.69 -0.8

Or see this region's nucleotide sequence