Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1828 and DvMF_1829 are separated by 567 nucleotides DvMF_1829 and DvMF_1830 are separated by 346 nucleotides
DvMF_1828: DvMF_1828 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,230,424 to 2,231,401
_1828
DvMF_1829: DvMF_1829 - extracellular solute-binding protein family 5 (RefSeq), at 2,231,969 to 2,233,531
_1829
DvMF_1830: DvMF_1830 - hypothetical protein (RefSeq), at 2,233,878 to 2,234,846
_1830
Position (kb)
2231
2232
2233
2234 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2231.494 kb on - strand at 2231.696 kb on + strand at 2231.883 kb on + strand at 2232.017 kb on - strand at 2232.059 kb on - strand at 2232.137 kb on - strand, within DvMF_1829 at 2232.336 kb on + strand, within DvMF_1829 at 2232.471 kb on - strand, within DvMF_1829 at 2232.588 kb on + strand, within DvMF_1829 at 2232.596 kb on - strand, within DvMF_1829 at 2232.596 kb on - strand, within DvMF_1829 at 2232.663 kb on - strand, within DvMF_1829 at 2232.663 kb on - strand, within DvMF_1829 at 2232.760 kb on + strand, within DvMF_1829 at 2232.812 kb on - strand, within DvMF_1829 at 2232.973 kb on - strand, within DvMF_1829 at 2233.200 kb on + strand, within DvMF_1829 at 2233.251 kb on + strand, within DvMF_1829 at 2233.414 kb on + strand at 2233.446 kb on + strand at 2233.653 kb on - strand at 2233.742 kb on - strand at 2233.790 kb on + strand at 2233.792 kb on + strand at 2234.130 kb on + strand, within DvMF_1830 at 2234.180 kb on - strand, within DvMF_1830 at 2234.325 kb on - strand, within DvMF_1830
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 2,231,494 - -0.3 2,231,696 + -0.1 2,231,883 + -0.3 2,232,017 - +1.1 2,232,059 - +1.0 2,232,137 - DvMF_1829 0.11 +0.1 2,232,336 + DvMF_1829 0.23 +1.3 2,232,471 - DvMF_1829 0.32 +1.6 2,232,588 + DvMF_1829 0.40 -1.3 2,232,596 - DvMF_1829 0.40 +1.0 2,232,596 - DvMF_1829 0.40 +1.2 2,232,663 - DvMF_1829 0.44 -0.2 2,232,663 - DvMF_1829 0.44 -0.7 2,232,760 + DvMF_1829 0.51 +1.9 2,232,812 - DvMF_1829 0.54 +0.4 2,232,973 - DvMF_1829 0.64 -0.3 2,233,200 + DvMF_1829 0.79 -0.5 2,233,251 + DvMF_1829 0.82 +1.0 2,233,414 + +2.1 2,233,446 + +1.3 2,233,653 - -0.6 2,233,742 - -1.0 2,233,790 + -0.3 2,233,792 + -0.4 2,234,130 + DvMF_1830 0.26 -1.3 2,234,180 - DvMF_1830 0.31 -2.4 2,234,325 - DvMF_1830 0.46 -1.8
Or see this region's nucleotide sequence