Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1784 and DvMF_1785 are separated by 420 nucleotides DvMF_1785 and DvMF_1786 are separated by 199 nucleotides DvMF_1786 and DvMF_1787 are separated by 224 nucleotides
DvMF_1784: DvMF_1784 - membrane-bound metal-dependent hydrolase (RefSeq), at 2,183,779 to 2,184,876
_1784
DvMF_1785: DvMF_1785 - no description, at 2,185,297 to 2,185,551
_1785
DvMF_1786: DvMF_1786 - protein of unknown function DUF523 (RefSeq), at 2,185,751 to 2,186,758
_1786
DvMF_1787: DvMF_1787 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,186,983 to 2,187,639
_1787
Position (kb)
2185
2186
2187 Strain fitness (log2 ratio)
-1
0
1 at 2184.781 kb on + strand at 2184.781 kb on + strand at 2184.781 kb on + strand at 2184.836 kb on - strand at 2184.998 kb on + strand at 2185.342 kb on - strand, within DvMF_1785 at 2185.356 kb on + strand, within DvMF_1785 at 2185.364 kb on - strand, within DvMF_1785 at 2186.052 kb on - strand, within DvMF_1786 at 2186.388 kb on + strand, within DvMF_1786 at 2186.485 kb on + strand, within DvMF_1786 at 2186.485 kb on + strand, within DvMF_1786 at 2186.485 kb on + strand, within DvMF_1786 at 2186.618 kb on - strand, within DvMF_1786 at 2186.646 kb on - strand, within DvMF_1786 at 2186.715 kb on - strand at 2186.733 kb on - strand at 2186.937 kb on - strand at 2187.426 kb on + strand, within DvMF_1787 at 2187.434 kb on - strand, within DvMF_1787 at 2187.478 kb on + strand, within DvMF_1787 at 2187.527 kb on - strand, within DvMF_1787
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 2,184,781 + +0.5 2,184,781 + -0.8 2,184,781 + -0.5 2,184,836 - -0.9 2,184,998 + -0.5 2,185,342 - DvMF_1785 0.18 -0.6 2,185,356 + DvMF_1785 0.23 -1.1 2,185,364 - DvMF_1785 0.26 -0.3 2,186,052 - DvMF_1786 0.30 -0.6 2,186,388 + DvMF_1786 0.63 -1.0 2,186,485 + DvMF_1786 0.73 -0.8 2,186,485 + DvMF_1786 0.73 -0.3 2,186,485 + DvMF_1786 0.73 -0.8 2,186,618 - DvMF_1786 0.86 -1.2 2,186,646 - DvMF_1786 0.89 -0.9 2,186,715 - -0.4 2,186,733 - +0.7 2,186,937 - -0.8 2,187,426 + DvMF_1787 0.67 -1.4 2,187,434 - DvMF_1787 0.69 -1.3 2,187,478 + DvMF_1787 0.75 -0.5 2,187,527 - DvMF_1787 0.83 -0.4
Or see this region's nucleotide sequence