Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1457

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1456 and DvMF_1457 are separated by 494 nucleotidesDvMF_1457 and DvMF_1458 are separated by 14 nucleotides DvMF_1456: DvMF_1456 - DNA-directed RNA polymerase, beta' subunit (RefSeq), at 1,780,231 to 1,784,388 _1456 DvMF_1457: DvMF_1457 - hypothetical protein (RefSeq), at 1,784,883 to 1,785,560 _1457 DvMF_1458: DvMF_1458 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,785,575 to 1,788,112 _1458 Position (kb) 1784 1785 1786Strain fitness (log2 ratio) -3 -2 -1 0 1at 1784.510 kb on - strandat 1784.510 kb on - strandat 1784.542 kb on + strandat 1784.970 kb on + strand, within DvMF_1457at 1785.118 kb on + strand, within DvMF_1457at 1785.232 kb on - strand, within DvMF_1457at 1785.739 kb on - strandat 1785.846 kb on + strand, within DvMF_1458at 1786.024 kb on - strand, within DvMF_1458at 1786.148 kb on - strand, within DvMF_1458at 1786.283 kb on + strand, within DvMF_1458at 1786.399 kb on - strand, within DvMF_1458

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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1,784,510 - -0.3
1,784,510 - -2.0
1,784,542 + -1.4
1,784,970 + DvMF_1457 0.13 +0.4
1,785,118 + DvMF_1457 0.35 -0.9
1,785,232 - DvMF_1457 0.51 +0.6
1,785,739 - -0.5
1,785,846 + DvMF_1458 0.11 -1.7
1,786,024 - DvMF_1458 0.18 +0.1
1,786,148 - DvMF_1458 0.23 -0.9
1,786,283 + DvMF_1458 0.28 -3.0
1,786,399 - DvMF_1458 0.32 +1.1

Or see this region's nucleotide sequence