Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1388 and DvMF_1389 are separated by 138 nucleotides DvMF_1389 and DvMF_1390 are separated by 112 nucleotides DvMF_1390 and DvMF_1391 are separated by 405 nucleotides
DvMF_1388: DvMF_1388 - ATP synthase F0, A subunit (RefSeq), at 1,696,103 to 1,696,804
_1388
DvMF_1389: DvMF_1389 - ATP synthase F0, C subunit (RefSeq), at 1,696,943 to 1,697,272
_1389
DvMF_1390: DvMF_1390 - redox-sensing transcriptional repressor Rex (RefSeq), at 1,697,385 to 1,698,032
_1390
DvMF_1391: DvMF_1391 - protein of unknown function DUF62 (RefSeq), at 1,698,438 to 1,699,325
_1391
Position (kb)
1697
1698
1699 Strain fitness (log2 ratio)
-1
0
1 at 1697.332 kb on + strand at 1698.108 kb on + strand at 1698.233 kb on - strand at 1698.337 kb on - strand at 1698.435 kb on + strand at 1698.524 kb on + strand at 1698.532 kb on + strand, within DvMF_1391 at 1698.593 kb on + strand, within DvMF_1391 at 1698.725 kb on - strand, within DvMF_1391 at 1698.726 kb on + strand, within DvMF_1391 at 1698.815 kb on - strand, within DvMF_1391 at 1698.876 kb on - strand, within DvMF_1391 at 1698.876 kb on - strand, within DvMF_1391
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 1,697,332 + -0.7 1,698,108 + -0.1 1,698,233 - +0.7 1,698,337 - -1.0 1,698,435 + +0.2 1,698,524 + -0.9 1,698,532 + DvMF_1391 0.11 -1.7 1,698,593 + DvMF_1391 0.17 -1.5 1,698,725 - DvMF_1391 0.32 -1.3 1,698,726 + DvMF_1391 0.32 -1.5 1,698,815 - DvMF_1391 0.42 -0.9 1,698,876 - DvMF_1391 0.49 -0.9 1,698,876 - DvMF_1391 0.49 +1.2
Or see this region's nucleotide sequence