Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1334 and DvMF_1335 are separated by 143 nucleotides DvMF_1335 and DvMF_1336 are separated by 179 nucleotides DvMF_1336 and DvMF_1337 are separated by 64 nucleotides DvMF_1337 and DvMF_1338 are separated by 31 nucleotides
DvMF_1334: DvMF_1334 - response regulator receiver protein (RefSeq), at 1,629,160 to 1,630,653
_1334
DvMF_1335: DvMF_1335 - hypothetical protein (RefSeq), at 1,630,797 to 1,631,336
_1335
DvMF_1336: DvMF_1336 - hypothetical protein (RefSeq), at 1,631,516 to 1,631,998
_1336
DvMF_1337: DvMF_1337 - 4-hydroxybenzoate polyprenyltransferase (RefSeq), at 1,632,063 to 1,632,923
_1337
DvMF_1338: DvMF_1338 - metal dependent phosphohydrolase (RefSeq), at 1,632,955 to 1,634,310
_1338
Position (kb) 1631
1632 Strain fitness (log2 ratio) -2
-1
0
1 at 1630.519 kb on + strand at 1630.588 kb on + strand at 1630.623 kb on + strand at 1630.624 kb on - strand at 1630.631 kb on - strand at 1630.709 kb on + strand at 1631.062 kb on - strand, within DvMF_1335 at 1631.625 kb on - strand, within DvMF_1336 at 1631.632 kb on + strand, within DvMF_1336 at 1631.959 kb on - strand at 1632.954 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 1,630,519 + +0.3 1,630,588 + +0.6 1,630,623 + -0.9 1,630,624 - -0.1 1,630,631 - -0.9 1,630,709 + -0.3 1,631,062 - DvMF_1335 0.49 -0.7 1,631,625 - DvMF_1336 0.23 -1.8 1,631,632 + DvMF_1336 0.24 -1.0 1,631,959 - -0.6 1,632,954 + +1.1
Or see this region's nucleotide sequence