Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1334

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1333 and DvMF_1334 are separated by 165 nucleotidesDvMF_1334 and DvMF_1335 are separated by 143 nucleotidesDvMF_1335 and DvMF_1336 are separated by 179 nucleotides DvMF_1333: DvMF_1333 - hypothetical protein (RefSeq), at 1,628,407 to 1,628,994 _1333 DvMF_1334: DvMF_1334 - response regulator receiver protein (RefSeq), at 1,629,160 to 1,630,653 _1334 DvMF_1335: DvMF_1335 - hypothetical protein (RefSeq), at 1,630,797 to 1,631,336 _1335 DvMF_1336: DvMF_1336 - hypothetical protein (RefSeq), at 1,631,516 to 1,631,998 _1336 Position (kb) 1629 1630 1631Strain fitness (log2 ratio) -2 -1 0 1at 1628.282 kb on - strandat 1628.507 kb on - strand, within DvMF_1333at 1628.974 kb on + strandat 1629.180 kb on + strandat 1629.269 kb on - strandat 1629.512 kb on + strand, within DvMF_1334at 1629.560 kb on - strand, within DvMF_1334at 1629.615 kb on + strand, within DvMF_1334at 1629.629 kb on + strand, within DvMF_1334at 1629.634 kb on + strand, within DvMF_1334at 1629.779 kb on - strand, within DvMF_1334at 1629.848 kb on - strand, within DvMF_1334at 1630.092 kb on - strand, within DvMF_1334at 1630.450 kb on + strand, within DvMF_1334at 1630.519 kb on + strandat 1630.588 kb on + strandat 1630.623 kb on + strandat 1630.624 kb on - strandat 1630.631 kb on - strandat 1630.709 kb on + strandat 1631.062 kb on - strand, within DvMF_1335at 1631.625 kb on - strand, within DvMF_1336at 1631.632 kb on + strand, within DvMF_1336

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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1,628,282 - -1.1
1,628,507 - DvMF_1333 0.17 -0.2
1,628,974 + -0.8
1,629,180 + -0.6
1,629,269 - -0.4
1,629,512 + DvMF_1334 0.24 -0.1
1,629,560 - DvMF_1334 0.27 -0.4
1,629,615 + DvMF_1334 0.30 -0.7
1,629,629 + DvMF_1334 0.31 +0.2
1,629,634 + DvMF_1334 0.32 -0.0
1,629,779 - DvMF_1334 0.41 +0.5
1,629,848 - DvMF_1334 0.46 -0.4
1,630,092 - DvMF_1334 0.62 -1.4
1,630,450 + DvMF_1334 0.86 -0.0
1,630,519 + +0.3
1,630,588 + +0.6
1,630,623 + -0.9
1,630,624 - -0.1
1,630,631 - -0.9
1,630,709 + -0.3
1,631,062 - DvMF_1335 0.49 -0.7
1,631,625 - DvMF_1336 0.23 -1.8
1,631,632 + DvMF_1336 0.24 -1.0

Or see this region's nucleotide sequence