Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1303

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1301 and DvMF_1302 are separated by 541 nucleotidesDvMF_1302 and DvMF_1303 overlap by 23 nucleotidesDvMF_1303 and DvMF_1304 are separated by 0 nucleotidesDvMF_1304 and DvMF_1305 overlap by 4 nucleotides DvMF_1301: DvMF_1301 - baseplate assembly protein, putative (RefSeq), at 1,590,736 to 1,591,461 _1301 DvMF_1302: DvMF_1302 - baseplate assembly protein, putative (RefSeq), at 1,592,003 to 1,592,437 _1302 DvMF_1303: DvMF_1303 - baseplate assembly protein, putative (RefSeq), at 1,592,415 to 1,593,587 _1303 DvMF_1304: DvMF_1304 - hypothetical protein (RefSeq), at 1,593,588 to 1,594,259 _1304 DvMF_1305: DvMF_1305 - tail fiber protein, putative (RefSeq), at 1,594,256 to 1,595,773 _1305 Position (kb) 1592 1593 1594Strain fitness (log2 ratio) -3 -2 -1 0 1at 1591.571 kb on - strandat 1592.161 kb on + strand, within DvMF_1302at 1592.203 kb on + strand, within DvMF_1302at 1592.261 kb on - strand, within DvMF_1302at 1592.302 kb on - strand, within DvMF_1302at 1592.318 kb on + strand, within DvMF_1302at 1592.375 kb on - strand, within DvMF_1302at 1592.453 kb on - strandat 1592.474 kb on + strandat 1592.492 kb on - strandat 1592.515 kb on - strandat 1592.727 kb on - strand, within DvMF_1303at 1593.090 kb on + strand, within DvMF_1303at 1593.132 kb on - strand, within DvMF_1303at 1593.147 kb on - strand, within DvMF_1303at 1593.346 kb on + strand, within DvMF_1303at 1593.383 kb on + strand, within DvMF_1303at 1593.383 kb on + strand, within DvMF_1303at 1593.391 kb on - strand, within DvMF_1303at 1593.391 kb on - strand, within DvMF_1303at 1593.391 kb on - strand, within DvMF_1303at 1593.391 kb on - strand, within DvMF_1303at 1593.526 kb on + strandat 1593.548 kb on - strandat 1593.892 kb on + strand, within DvMF_1304at 1593.954 kb on - strand, within DvMF_1304at 1594.239 kb on - strandat 1594.466 kb on + strand, within DvMF_1305at 1594.568 kb on - strand, within DvMF_1305

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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1,591,571 - -0.1
1,592,161 + DvMF_1302 0.36 -2.2
1,592,203 + DvMF_1302 0.46 -0.8
1,592,261 - DvMF_1302 0.59 -0.2
1,592,302 - DvMF_1302 0.69 +0.6
1,592,318 + DvMF_1302 0.72 -0.8
1,592,375 - DvMF_1302 0.86 -1.7
1,592,453 - -0.9
1,592,474 + -0.6
1,592,492 - -0.7
1,592,515 - -1.0
1,592,727 - DvMF_1303 0.27 -1.1
1,593,090 + DvMF_1303 0.58 -1.1
1,593,132 - DvMF_1303 0.61 -0.2
1,593,147 - DvMF_1303 0.62 -0.9
1,593,346 + DvMF_1303 0.79 -1.8
1,593,383 + DvMF_1303 0.83 -1.5
1,593,383 + DvMF_1303 0.83 -1.3
1,593,391 - DvMF_1303 0.83 -1.1
1,593,391 - DvMF_1303 0.83 -3.0
1,593,391 - DvMF_1303 0.83 -0.6
1,593,391 - DvMF_1303 0.83 -0.9
1,593,526 + -0.7
1,593,548 - -0.5
1,593,892 + DvMF_1304 0.45 -0.9
1,593,954 - DvMF_1304 0.54 -0.6
1,594,239 - -1.6
1,594,466 + DvMF_1305 0.14 -1.1
1,594,568 - DvMF_1305 0.21 -3.5

Or see this region's nucleotide sequence