Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1299 and DvMF_1300 overlap by 1 nucleotides DvMF_1300 and DvMF_1301 overlap by 14 nucleotides DvMF_1301 and DvMF_1302 are separated by 541 nucleotides DvMF_1302 and DvMF_1303 overlap by 23 nucleotides
DvMF_1299: DvMF_1299 - hypothetical protein (RefSeq), at 1,589,404 to 1,589,949
_1299
DvMF_1300: DvMF_1300 - hypothetical protein (RefSeq), at 1,589,949 to 1,590,749
_1300
DvMF_1301: DvMF_1301 - baseplate assembly protein, putative (RefSeq), at 1,590,736 to 1,591,461
_1301
DvMF_1302: DvMF_1302 - baseplate assembly protein, putative (RefSeq), at 1,592,003 to 1,592,437
_1302
DvMF_1303: DvMF_1303 - baseplate assembly protein, putative (RefSeq), at 1,592,415 to 1,593,587
_1303
Position (kb)
1590
1591
1592 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1589.854 kb on + strand, within DvMF_1299 at 1589.879 kb on - strand, within DvMF_1299 at 1590.058 kb on + strand, within DvMF_1300 at 1590.254 kb on + strand, within DvMF_1300 at 1590.462 kb on - strand, within DvMF_1300 at 1590.507 kb on + strand, within DvMF_1300 at 1590.509 kb on + strand, within DvMF_1300 at 1590.929 kb on + strand, within DvMF_1301 at 1591.014 kb on - strand, within DvMF_1301 at 1591.571 kb on - strand at 1592.161 kb on + strand, within DvMF_1302 at 1592.203 kb on + strand, within DvMF_1302 at 1592.261 kb on - strand, within DvMF_1302 at 1592.302 kb on - strand, within DvMF_1302 at 1592.318 kb on + strand, within DvMF_1302 at 1592.375 kb on - strand, within DvMF_1302 at 1592.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 1,589,854 + DvMF_1299 0.82 -1.2 1,589,879 - DvMF_1299 0.87 -1.0 1,590,058 + DvMF_1300 0.14 -0.9 1,590,254 + DvMF_1300 0.38 -0.9 1,590,462 - DvMF_1300 0.64 -0.6 1,590,507 + DvMF_1300 0.70 -3.4 1,590,509 + DvMF_1300 0.70 -0.3 1,590,929 + DvMF_1301 0.27 -1.2 1,591,014 - DvMF_1301 0.38 -1.1 1,591,571 - -0.1 1,592,161 + DvMF_1302 0.36 -2.2 1,592,203 + DvMF_1302 0.46 -0.8 1,592,261 - DvMF_1302 0.59 -0.2 1,592,302 - DvMF_1302 0.69 +0.6 1,592,318 + DvMF_1302 0.72 -0.8 1,592,375 - DvMF_1302 0.86 -1.7 1,592,453 - -0.9
Or see this region's nucleotide sequence