Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1218

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1217 and DvMF_1218 are separated by 74 nucleotidesDvMF_1218 and DvMF_1219 are separated by 603 nucleotides DvMF_1217: DvMF_1217 - formate dehydrogenase, alpha subunit (RefSeq), at 1,498,036 to 1,501,062 _1217 DvMF_1218: DvMF_1218 - hypothetical protein (RefSeq), at 1,501,137 to 1,501,373 _1218 DvMF_1219: DvMF_1219 - transposase, putative (RefSeq), at 1,501,977 to 1,502,900 _1219 Position (kb) 1501 1502Strain fitness (log2 ratio) -1 0 1 2at 1500.178 kb on - strand, within DvMF_1217at 1500.188 kb on - strand, within DvMF_1217at 1500.323 kb on + strand, within DvMF_1217at 1500.401 kb on + strand, within DvMF_1217at 1500.411 kb on + strand, within DvMF_1217at 1500.744 kb on - strand, within DvMF_1217at 1500.896 kb on - strandat 1500.938 kb on - strandat 1501.534 kb on - strandat 1501.725 kb on - strandat 1501.853 kb on + strandat 1501.853 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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1,500,178 - DvMF_1217 0.71 +0.6
1,500,188 - DvMF_1217 0.71 -1.4
1,500,323 + DvMF_1217 0.76 -0.6
1,500,401 + DvMF_1217 0.78 +2.0
1,500,411 + DvMF_1217 0.78 -0.0
1,500,744 - DvMF_1217 0.89 -0.6
1,500,896 - -0.1
1,500,938 - -0.6
1,501,534 - +1.5
1,501,725 - -0.8
1,501,853 + +0.2
1,501,853 + -0.4

Or see this region's nucleotide sequence