Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1215 and DvMF_1216 are separated by 374 nucleotides DvMF_1216 and DvMF_1217 are separated by 2 nucleotides
DvMF_1215: DvMF_1215 - molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq), at 1,496,241 to 1,496,951
_1215
DvMF_1216: DvMF_1216 - formate dehydrogenase, beta subunit, putative (RefSeq), at 1,497,326 to 1,498,033
_1216
DvMF_1217: DvMF_1217 - formate dehydrogenase, alpha subunit (RefSeq), at 1,498,036 to 1,501,062
_1217
Position (kb)
1497
1498
1499 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1496.452 kb on - strand, within DvMF_1215 at 1496.454 kb on + strand, within DvMF_1215 at 1496.509 kb on + strand, within DvMF_1215 at 1496.515 kb on - strand, within DvMF_1215 at 1496.636 kb on + strand, within DvMF_1215 at 1496.737 kb on + strand, within DvMF_1215 at 1496.745 kb on - strand, within DvMF_1215 at 1496.745 kb on - strand, within DvMF_1215 at 1496.777 kb on - strand, within DvMF_1215 at 1496.835 kb on - strand, within DvMF_1215 at 1497.152 kb on + strand at 1497.326 kb on - strand at 1497.326 kb on - strand at 1497.444 kb on - strand, within DvMF_1216 at 1497.559 kb on + strand, within DvMF_1216 at 1497.820 kb on + strand, within DvMF_1216 at 1498.325 kb on - strand at 1498.706 kb on + strand, within DvMF_1217 at 1498.839 kb on + strand, within DvMF_1217 at 1498.943 kb on + strand, within DvMF_1217 at 1498.951 kb on - strand, within DvMF_1217 at 1498.951 kb on - strand, within DvMF_1217 at 1498.951 kb on - strand, within DvMF_1217 at 1498.962 kb on + strand, within DvMF_1217
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 1,496,452 - DvMF_1215 0.30 +0.3 1,496,454 + DvMF_1215 0.30 -0.4 1,496,509 + DvMF_1215 0.38 -0.2 1,496,515 - DvMF_1215 0.39 -0.5 1,496,636 + DvMF_1215 0.56 +0.9 1,496,737 + DvMF_1215 0.70 +0.4 1,496,745 - DvMF_1215 0.71 +0.7 1,496,745 - DvMF_1215 0.71 -1.2 1,496,777 - DvMF_1215 0.75 -0.2 1,496,835 - DvMF_1215 0.84 +0.1 1,497,152 + +0.9 1,497,326 - +1.4 1,497,326 - -0.6 1,497,444 - DvMF_1216 0.17 -1.1 1,497,559 + DvMF_1216 0.33 +0.0 1,497,820 + DvMF_1216 0.70 -1.9 1,498,325 - -0.8 1,498,706 + DvMF_1217 0.22 -1.0 1,498,839 + DvMF_1217 0.27 -2.7 1,498,943 + DvMF_1217 0.30 -2.1 1,498,951 - DvMF_1217 0.30 -0.3 1,498,951 - DvMF_1217 0.30 -3.5 1,498,951 - DvMF_1217 0.30 -2.1 1,498,962 + DvMF_1217 0.31 -2.8
Or see this region's nucleotide sequence