Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1182 and DvMF_1183 are separated by 15 nucleotides DvMF_1183 and DvMF_R0036 are separated by 22 nucleotides DvMF_R0036 and DvMF_1184 are separated by 281 nucleotides DvMF_1184 and DvMF_1185 are separated by 508 nucleotides
DvMF_1182: DvMF_1182 - hypothetical protein (RefSeq), at 1,460,884 to 1,461,120
_1182
DvMF_1183: DvMF_1183 - hypothetical protein (RefSeq), at 1,461,136 to 1,461,399
_1183
DvMF_R0036: DvMF_R0036 - 6S RNA (RefSeq), at 1,461,422 to 1,461,607
_R0036
DvMF_1184: DvMF_1184 - phosphodiesterase (RefSeq), at 1,461,889 to 1,463,448
_1184
DvMF_1185: DvMF_1185 - extracellular solute-binding protein family 3 (RefSeq), at 1,463,957 to 1,464,730
_1185
Position (kb) 1461
1462
1463
1464 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1460.934 kb on + strand, within DvMF_1182 at 1461.283 kb on + strand, within DvMF_1183 at 1461.659 kb on + strand at 1461.659 kb on + strand at 1461.814 kb on + strand at 1463.624 kb on - strand at 1463.967 kb on + strand at 1463.980 kb on - strand at 1464.227 kb on + strand, within DvMF_1185
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 1,460,934 + DvMF_1182 0.21 -2.7 1,461,283 + DvMF_1183 0.56 -2.6 1,461,659 + -1.5 1,461,659 + -0.4 1,461,814 + +0.6 1,463,624 - -1.0 1,463,967 + -0.1 1,463,980 - -2.5 1,464,227 + DvMF_1185 0.35 -4.0
Or see this region's nucleotide sequence