Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1180 and DvMF_1181 are separated by 345 nucleotides DvMF_1181 and DvMF_1182 are separated by 31 nucleotides DvMF_1182 and DvMF_1183 are separated by 15 nucleotides DvMF_1183 and DvMF_R0036 are separated by 22 nucleotides
DvMF_1180: DvMF_1180 - hypothetical protein (RefSeq), at 1,458,669 to 1,459,139
_1180
DvMF_1181: DvMF_1181 - UDP-N-acetylglucosamine pyrophosphorylase (RefSeq), at 1,459,485 to 1,460,852
_1181
DvMF_1182: DvMF_1182 - hypothetical protein (RefSeq), at 1,460,884 to 1,461,120
_1182
DvMF_1183: DvMF_1183 - hypothetical protein (RefSeq), at 1,461,136 to 1,461,399
_1183
DvMF_R0036: DvMF_R0036 - 6S RNA (RefSeq), at 1,461,422 to 1,461,607
_R0036
Position (kb)
1459
1460
1461 Strain fitness (log2 ratio)
-2
-1
0
1 at 1458.497 kb on - strand at 1458.532 kb on + strand at 1458.533 kb on - strand at 1458.630 kb on + strand at 1458.864 kb on - strand, within DvMF_1180 at 1459.142 kb on + strand at 1459.355 kb on - strand at 1459.355 kb on - strand at 1459.355 kb on - strand at 1460.934 kb on + strand, within DvMF_1182 at 1461.283 kb on + strand, within DvMF_1183 at 1461.659 kb on + strand at 1461.659 kb on + strand at 1461.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 1,458,497 - -0.3 1,458,532 + -0.3 1,458,533 - -0.6 1,458,630 + -0.4 1,458,864 - DvMF_1180 0.41 +0.1 1,459,142 + -1.9 1,459,355 - -2.1 1,459,355 - -0.9 1,459,355 - -2.0 1,460,934 + DvMF_1182 0.21 -2.7 1,461,283 + DvMF_1183 0.56 -2.6 1,461,659 + -1.5 1,461,659 + -0.4 1,461,814 + +0.6
Or see this region's nucleotide sequence