Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1152

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1151 and DvMF_R0035 are separated by 218 nucleotidesDvMF_R0035 and DvMF_1152 are separated by 345 nucleotidesDvMF_1152 and DvMF_1153 are separated by 220 nucleotides DvMF_1151: DvMF_1151 - transcriptional regulator, LysR family (RefSeq), at 1,411,686 to 1,412,609 _1151 DvMF_R0035: DvMF_R0035 - tRNA-Leu (RefSeq), at 1,412,828 to 1,412,914 _R0035 DvMF_1152: DvMF_1152 - Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme (RefSeq), at 1,413,260 to 1,414,408 _1152 DvMF_1153: DvMF_1153 - Phenylacetate--CoA ligase (RefSeq), at 1,414,629 to 1,415,933 _1153 Position (kb) 1413 1414 1415Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1412.327 kb on - strand, within DvMF_1151at 1412.405 kb on + strand, within DvMF_1151at 1412.478 kb on + strand, within DvMF_1151at 1412.603 kb on + strandat 1412.611 kb on - strandat 1412.767 kb on + strandat 1412.780 kb on - strandat 1413.125 kb on - strandat 1413.141 kb on - strandat 1413.496 kb on - strand, within DvMF_1152at 1413.582 kb on - strand, within DvMF_1152at 1413.599 kb on + strand, within DvMF_1152at 1413.799 kb on + strand, within DvMF_1152at 1413.901 kb on + strand, within DvMF_1152at 1414.027 kb on + strand, within DvMF_1152at 1414.096 kb on - strand, within DvMF_1152at 1414.108 kb on + strand, within DvMF_1152at 1414.249 kb on - strand, within DvMF_1152at 1414.705 kb on + strandat 1414.875 kb on - strand, within DvMF_1153at 1414.935 kb on - strand, within DvMF_1153at 1415.160 kb on - strand, within DvMF_1153at 1415.264 kb on - strand, within DvMF_1153at 1415.293 kb on + strand, within DvMF_1153at 1415.331 kb on - strand, within DvMF_1153at 1415.358 kb on + strand, within DvMF_1153at 1415.391 kb on - strand, within DvMF_1153

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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1,412,327 - DvMF_1151 0.69 -0.9
1,412,405 + DvMF_1151 0.78 -0.3
1,412,478 + DvMF_1151 0.86 -0.7
1,412,603 + -1.2
1,412,611 - -0.9
1,412,767 + -0.5
1,412,780 - -0.7
1,413,125 - -1.2
1,413,141 - -3.8
1,413,496 - DvMF_1152 0.21 -0.5
1,413,582 - DvMF_1152 0.28 -1.3
1,413,599 + DvMF_1152 0.30 -0.6
1,413,799 + DvMF_1152 0.47 -1.0
1,413,901 + DvMF_1152 0.56 -0.6
1,414,027 + DvMF_1152 0.67 -1.6
1,414,096 - DvMF_1152 0.73 -0.1
1,414,108 + DvMF_1152 0.74 -0.6
1,414,249 - DvMF_1152 0.86 -0.6
1,414,705 + -1.5
1,414,875 - DvMF_1153 0.19 -1.0
1,414,935 - DvMF_1153 0.23 -2.3
1,415,160 - DvMF_1153 0.41 -0.3
1,415,264 - DvMF_1153 0.49 -0.7
1,415,293 + DvMF_1153 0.51 -1.6
1,415,331 - DvMF_1153 0.54 -0.8
1,415,358 + DvMF_1153 0.56 -1.0
1,415,391 - DvMF_1153 0.58 -0.6

Or see this region's nucleotide sequence