Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1067 and DvMF_1068 are separated by 77 nucleotides DvMF_1068 and DvMF_1069 are separated by 74 nucleotides DvMF_1069 and DvMF_1070 are separated by 19 nucleotides DvMF_1070 and DvMF_1071 are separated by 84 nucleotides
DvMF_1067: DvMF_1067 - hypothetical protein (RefSeq), at 1,308,427 to 1,309,047
_1067
DvMF_1068: DvMF_1068 - hypothetical protein (RefSeq), at 1,309,125 to 1,309,523
_1068
DvMF_1069: DvMF_1069 - hypothetical protein (RefSeq), at 1,309,598 to 1,310,512
_1069
DvMF_1070: DvMF_1070 - hypothetical protein (RefSeq), at 1,310,532 to 1,311,197
_1070
DvMF_1071: DvMF_1071 - hypothetical protein (RefSeq), at 1,311,282 to 1,311,773
_1071
Position (kb)
1309
1310
1311 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1308.644 kb on + strand, within DvMF_1067 at 1308.721 kb on + strand, within DvMF_1067 at 1308.729 kb on + strand, within DvMF_1067 at 1309.064 kb on - strand at 1309.112 kb on - strand at 1309.361 kb on + strand, within DvMF_1068 at 1309.587 kb on + strand at 1309.615 kb on + strand at 1309.741 kb on - strand, within DvMF_1069 at 1310.014 kb on + strand, within DvMF_1069 at 1310.188 kb on - strand, within DvMF_1069 at 1310.286 kb on + strand, within DvMF_1069 at 1310.549 kb on + strand at 1310.872 kb on + strand, within DvMF_1070 at 1310.882 kb on + strand, within DvMF_1070 at 1310.882 kb on + strand, within DvMF_1070 at 1310.971 kb on - strand, within DvMF_1070 at 1311.046 kb on - strand, within DvMF_1070 at 1311.319 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 1,308,644 + DvMF_1067 0.35 +0.6 1,308,721 + DvMF_1067 0.47 +1.0 1,308,729 + DvMF_1067 0.49 +0.0 1,309,064 - -0.1 1,309,112 - -0.8 1,309,361 + DvMF_1068 0.59 -1.3 1,309,587 + +3.6 1,309,615 + -1.6 1,309,741 - DvMF_1069 0.16 -0.7 1,310,014 + DvMF_1069 0.45 -0.7 1,310,188 - DvMF_1069 0.64 -1.2 1,310,286 + DvMF_1069 0.75 -2.7 1,310,549 + -2.1 1,310,872 + DvMF_1070 0.51 -1.8 1,310,882 + DvMF_1070 0.53 -0.0 1,310,882 + DvMF_1070 0.53 -2.0 1,310,971 - DvMF_1070 0.66 -2.8 1,311,046 - DvMF_1070 0.77 -1.5 1,311,319 + -0.1
Or see this region's nucleotide sequence