Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0930

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0929 and DvMF_0930 are separated by 359 nucleotidesDvMF_0930 and DvMF_0931 are separated by 153 nucleotides DvMF_0929: DvMF_0929 - transcriptional regulator, LuxR family (RefSeq), at 1,126,202 to 1,127,698 _0929 DvMF_0930: DvMF_0930 - cytoplasmic chaperone TorD family protein (RefSeq), at 1,128,058 to 1,128,780 _0930 DvMF_0931: DvMF_0931 - molybdopterin oxidoreductase (RefSeq), at 1,128,934 to 1,131,165 _0931 Position (kb) 1128 1129Strain fitness (log2 ratio) -1 0 1 2 3at 1127.345 kb on + strand, within DvMF_0929at 1127.352 kb on + strand, within DvMF_0929at 1127.353 kb on - strand, within DvMF_0929at 1127.449 kb on + strand, within DvMF_0929at 1127.683 kb on - strandat 1128.023 kb on - strandat 1128.342 kb on - strand, within DvMF_0930at 1128.490 kb on + strand, within DvMF_0930at 1128.491 kb on + strand, within DvMF_0930at 1128.543 kb on + strand, within DvMF_0930at 1128.622 kb on - strand, within DvMF_0930at 1128.634 kb on + strand, within DvMF_0930at 1129.010 kb on + strandat 1129.110 kb on + strandat 1129.125 kb on + strandat 1129.168 kb on + strand, within DvMF_0931at 1129.240 kb on + strand, within DvMF_0931at 1129.299 kb on - strand, within DvMF_0931at 1129.425 kb on + strand, within DvMF_0931at 1129.575 kb on - strand, within DvMF_0931at 1129.582 kb on - strand, within DvMF_0931at 1129.604 kb on - strand, within DvMF_0931at 1129.668 kb on + strand, within DvMF_0931at 1129.694 kb on - strand, within DvMF_0931at 1129.736 kb on + strand, within DvMF_0931

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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1,127,345 + DvMF_0929 0.76 +1.7
1,127,352 + DvMF_0929 0.77 +1.7
1,127,353 - DvMF_0929 0.77 +1.5
1,127,449 + DvMF_0929 0.83 +1.4
1,127,683 - +1.8
1,128,023 - -0.4
1,128,342 - DvMF_0930 0.39 +1.6
1,128,490 + DvMF_0930 0.60 +1.6
1,128,491 + DvMF_0930 0.60 +3.5
1,128,543 + DvMF_0930 0.67 +1.4
1,128,622 - DvMF_0930 0.78 +1.7
1,128,634 + DvMF_0930 0.80 +1.8
1,129,010 + +2.1
1,129,110 + +2.3
1,129,125 + +1.7
1,129,168 + DvMF_0931 0.10 +2.8
1,129,240 + DvMF_0931 0.14 +1.7
1,129,299 - DvMF_0931 0.16 +2.5
1,129,425 + DvMF_0931 0.22 +1.1
1,129,575 - DvMF_0931 0.29 +1.5
1,129,582 - DvMF_0931 0.29 +1.8
1,129,604 - DvMF_0931 0.30 +2.5
1,129,668 + DvMF_0931 0.33 +2.4
1,129,694 - DvMF_0931 0.34 +1.5
1,129,736 + DvMF_0931 0.36 +1.7

Or see this region's nucleotide sequence