Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0929

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0928 and DvMF_0929 are separated by 514 nucleotidesDvMF_0929 and DvMF_0930 are separated by 359 nucleotides DvMF_0928: DvMF_0928 - hypothetical protein (RefSeq), at 1,125,196 to 1,125,687 _0928 DvMF_0929: DvMF_0929 - transcriptional regulator, LuxR family (RefSeq), at 1,126,202 to 1,127,698 _0929 DvMF_0930: DvMF_0930 - cytoplasmic chaperone TorD family protein (RefSeq), at 1,128,058 to 1,128,780 _0930 Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -1 0 1 2 3at 1125.499 kb on - strand, within DvMF_0928at 1125.505 kb on + strand, within DvMF_0928at 1125.513 kb on - strand, within DvMF_0928at 1125.608 kb on - strand, within DvMF_0928at 1125.791 kb on + strandat 1125.964 kb on - strandat 1125.998 kb on + strandat 1126.166 kb on - strandat 1126.466 kb on + strand, within DvMF_0929at 1126.489 kb on - strand, within DvMF_0929at 1126.636 kb on - strand, within DvMF_0929at 1126.636 kb on - strand, within DvMF_0929at 1126.639 kb on + strand, within DvMF_0929at 1126.782 kb on - strand, within DvMF_0929at 1126.996 kb on + strand, within DvMF_0929at 1127.345 kb on + strand, within DvMF_0929at 1127.352 kb on + strand, within DvMF_0929at 1127.353 kb on - strand, within DvMF_0929at 1127.449 kb on + strand, within DvMF_0929at 1127.683 kb on - strandat 1128.023 kb on - strandat 1128.342 kb on - strand, within DvMF_0930at 1128.490 kb on + strand, within DvMF_0930at 1128.491 kb on + strand, within DvMF_0930at 1128.543 kb on + strand, within DvMF_0930at 1128.622 kb on - strand, within DvMF_0930at 1128.634 kb on + strand, within DvMF_0930

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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1,125,499 - DvMF_0928 0.62 -1.7
1,125,505 + DvMF_0928 0.63 -1.0
1,125,513 - DvMF_0928 0.64 -0.4
1,125,608 - DvMF_0928 0.84 -1.1
1,125,791 + -0.3
1,125,964 - -0.8
1,125,998 + -1.5
1,126,166 - -1.1
1,126,466 + DvMF_0929 0.18 +1.6
1,126,489 - DvMF_0929 0.19 +1.7
1,126,636 - DvMF_0929 0.29 +2.3
1,126,636 - DvMF_0929 0.29 +1.9
1,126,639 + DvMF_0929 0.29 +1.5
1,126,782 - DvMF_0929 0.39 +1.7
1,126,996 + DvMF_0929 0.53 +1.8
1,127,345 + DvMF_0929 0.76 +1.7
1,127,352 + DvMF_0929 0.77 +1.7
1,127,353 - DvMF_0929 0.77 +1.5
1,127,449 + DvMF_0929 0.83 +1.4
1,127,683 - +1.8
1,128,023 - -0.4
1,128,342 - DvMF_0930 0.39 +1.6
1,128,490 + DvMF_0930 0.60 +1.6
1,128,491 + DvMF_0930 0.60 +3.5
1,128,543 + DvMF_0930 0.67 +1.4
1,128,622 - DvMF_0930 0.78 +1.7
1,128,634 + DvMF_0930 0.80 +1.8

Or see this region's nucleotide sequence