Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0928 and DvMF_0929 are separated by 514 nucleotides DvMF_0929 and DvMF_0930 are separated by 359 nucleotides
DvMF_0928: DvMF_0928 - hypothetical protein (RefSeq), at 1,125,196 to 1,125,687
_0928
DvMF_0929: DvMF_0929 - transcriptional regulator, LuxR family (RefSeq), at 1,126,202 to 1,127,698
_0929
DvMF_0930: DvMF_0930 - cytoplasmic chaperone TorD family protein (RefSeq), at 1,128,058 to 1,128,780
_0930
Position (kb)
1126
1127
1128 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1125.499 kb on - strand, within DvMF_0928 at 1125.505 kb on + strand, within DvMF_0928 at 1125.513 kb on - strand, within DvMF_0928 at 1125.608 kb on - strand, within DvMF_0928 at 1125.791 kb on + strand at 1125.964 kb on - strand at 1125.998 kb on + strand at 1126.166 kb on - strand at 1126.466 kb on + strand, within DvMF_0929 at 1126.489 kb on - strand, within DvMF_0929 at 1126.636 kb on - strand, within DvMF_0929 at 1126.636 kb on - strand, within DvMF_0929 at 1126.639 kb on + strand, within DvMF_0929 at 1126.782 kb on - strand, within DvMF_0929 at 1126.996 kb on + strand, within DvMF_0929 at 1127.345 kb on + strand, within DvMF_0929 at 1127.352 kb on + strand, within DvMF_0929 at 1127.353 kb on - strand, within DvMF_0929 at 1127.449 kb on + strand, within DvMF_0929 at 1127.683 kb on - strand at 1128.023 kb on - strand at 1128.342 kb on - strand, within DvMF_0930 at 1128.490 kb on + strand, within DvMF_0930 at 1128.491 kb on + strand, within DvMF_0930 at 1128.543 kb on + strand, within DvMF_0930 at 1128.622 kb on - strand, within DvMF_0930 at 1128.634 kb on + strand, within DvMF_0930
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 1,125,499 - DvMF_0928 0.62 -1.7 1,125,505 + DvMF_0928 0.63 -1.0 1,125,513 - DvMF_0928 0.64 -0.4 1,125,608 - DvMF_0928 0.84 -1.1 1,125,791 + -0.3 1,125,964 - -0.8 1,125,998 + -1.5 1,126,166 - -1.1 1,126,466 + DvMF_0929 0.18 +1.6 1,126,489 - DvMF_0929 0.19 +1.7 1,126,636 - DvMF_0929 0.29 +2.3 1,126,636 - DvMF_0929 0.29 +1.9 1,126,639 + DvMF_0929 0.29 +1.5 1,126,782 - DvMF_0929 0.39 +1.7 1,126,996 + DvMF_0929 0.53 +1.8 1,127,345 + DvMF_0929 0.76 +1.7 1,127,352 + DvMF_0929 0.77 +1.7 1,127,353 - DvMF_0929 0.77 +1.5 1,127,449 + DvMF_0929 0.83 +1.4 1,127,683 - +1.8 1,128,023 - -0.4 1,128,342 - DvMF_0930 0.39 +1.6 1,128,490 + DvMF_0930 0.60 +1.6 1,128,491 + DvMF_0930 0.60 +3.5 1,128,543 + DvMF_0930 0.67 +1.4 1,128,622 - DvMF_0930 0.78 +1.7 1,128,634 + DvMF_0930 0.80 +1.8
Or see this region's nucleotide sequence