Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0874

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0873 and DvMF_0874 are separated by 292 nucleotidesDvMF_0874 and DvMF_0875 are separated by 307 nucleotides DvMF_0873: DvMF_0873 - nuclease (SNase domain protein) (RefSeq), at 1,053,124 to 1,053,564 _0873 DvMF_0874: DvMF_0874 - sodium:neurotransmitter symporter (RefSeq), at 1,053,857 to 1,055,221 _0874 DvMF_0875: DvMF_0875 - thiamine biosynthesis protein (RefSeq), at 1,055,529 to 1,056,635 _0875 Position (kb) 1053 1054 1055 1056Strain fitness (log2 ratio) -2 -1 0 1at 1052.995 kb on + strandat 1053.027 kb on + strandat 1053.275 kb on + strand, within DvMF_0873at 1053.327 kb on + strand, within DvMF_0873at 1053.364 kb on - strand, within DvMF_0873at 1053.410 kb on - strand, within DvMF_0873at 1053.425 kb on + strand, within DvMF_0873at 1053.906 kb on - strandat 1054.552 kb on - strand, within DvMF_0874at 1054.558 kb on + strand, within DvMF_0874at 1054.630 kb on + strand, within DvMF_0874at 1054.630 kb on + strand, within DvMF_0874at 1054.630 kb on + strand, within DvMF_0874at 1054.630 kb on + strand, within DvMF_0874at 1054.630 kb on + strand, within DvMF_0874at 1054.638 kb on - strand, within DvMF_0874at 1054.638 kb on - strand, within DvMF_0874at 1054.893 kb on + strand, within DvMF_0874at 1054.954 kb on - strand, within DvMF_0874at 1055.658 kb on + strand, within DvMF_0875at 1055.694 kb on - strand, within DvMF_0875at 1055.713 kb on + strand, within DvMF_0875at 1055.788 kb on - strand, within DvMF_0875at 1056.005 kb on + strand, within DvMF_0875

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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1,052,995 + -0.4
1,053,027 + -0.9
1,053,275 + DvMF_0873 0.34 -1.9
1,053,327 + DvMF_0873 0.46 -1.1
1,053,364 - DvMF_0873 0.54 -0.1
1,053,410 - DvMF_0873 0.65 -0.3
1,053,425 + DvMF_0873 0.68 -1.0
1,053,906 - +1.1
1,054,552 - DvMF_0874 0.51 +1.4
1,054,558 + DvMF_0874 0.51 +1.3
1,054,630 + DvMF_0874 0.57 +1.7
1,054,630 + DvMF_0874 0.57 -0.6
1,054,630 + DvMF_0874 0.57 +1.4
1,054,630 + DvMF_0874 0.57 +1.3
1,054,630 + DvMF_0874 0.57 +0.3
1,054,638 - DvMF_0874 0.57 +1.4
1,054,638 - DvMF_0874 0.57 +0.8
1,054,893 + DvMF_0874 0.76 +0.2
1,054,954 - DvMF_0874 0.80 +0.9
1,055,658 + DvMF_0875 0.12 -0.7
1,055,694 - DvMF_0875 0.15 -1.1
1,055,713 + DvMF_0875 0.17 -0.4
1,055,788 - DvMF_0875 0.23 -1.5
1,056,005 + DvMF_0875 0.43 -2.3

Or see this region's nucleotide sequence