Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0852 and DvMF_0853 are separated by 12 nucleotides DvMF_0853 and DvMF_0854 are separated by 108 nucleotides DvMF_0854 and DvMF_0855 are separated by 2 nucleotides DvMF_0855 and DvMF_0856 are separated by 40 nucleotides
DvMF_0852: DvMF_0852 - protein of unknown function DUF140 (RefSeq), at 1,030,453 to 1,031,256
_0852
DvMF_0853: DvMF_0853 - ABC transporter related (RefSeq), at 1,031,269 to 1,032,090
_0853
DvMF_0854: DvMF_0854 - Mammalian cell entry related domain protein (RefSeq), at 1,032,199 to 1,032,645
_0854
DvMF_0855: DvMF_0855 - toluene tolerance family protein (RefSeq), at 1,032,648 to 1,033,352
_0855
DvMF_0856: DvMF_0856 - VacJ family lipoprotein (RefSeq), at 1,033,393 to 1,034,172
_0856
Position (kb)
1032
1033 Strain fitness (log2 ratio)
-1
0
1
2 at 1031.557 kb on - strand, within DvMF_0853 at 1031.562 kb on - strand, within DvMF_0853 at 1032.309 kb on + strand, within DvMF_0854 at 1032.330 kb on + strand, within DvMF_0854 at 1032.405 kb on + strand, within DvMF_0854 at 1032.461 kb on - strand, within DvMF_0854 at 1032.630 kb on + strand at 1032.707 kb on + strand at 1032.797 kb on - strand, within DvMF_0855 at 1032.852 kb on + strand, within DvMF_0855 at 1033.015 kb on + strand, within DvMF_0855 at 1033.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 1,031,557 - DvMF_0853 0.35 -1.1 1,031,562 - DvMF_0853 0.36 +0.5 1,032,309 + DvMF_0854 0.25 +0.9 1,032,330 + DvMF_0854 0.29 +0.7 1,032,405 + DvMF_0854 0.46 +1.1 1,032,461 - DvMF_0854 0.59 +1.9 1,032,630 + +0.9 1,032,707 + +0.8 1,032,797 - DvMF_0855 0.21 +0.8 1,032,852 + DvMF_0855 0.29 -0.7 1,033,015 + DvMF_0855 0.52 +0.6 1,033,286 + +1.4
Or see this region's nucleotide sequence