Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0831

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0830 and DvMF_0831 are separated by 236 nucleotidesDvMF_0831 and DvMF_0832 are separated by 151 nucleotidesDvMF_0832 and DvMF_0833 are separated by 278 nucleotides DvMF_0830: DvMF_0830 - HI0933 family protein (RefSeq), at 1,002,304 to 1,003,563 _0830 DvMF_0831: DvMF_0831 - protein of unknown function DUF21 (RefSeq), at 1,003,800 to 1,005,158 _0831 DvMF_0832: DvMF_0832 - hypothetical protein (RefSeq), at 1,005,310 to 1,005,576 _0832 DvMF_0833: DvMF_0833 - cobalamin biosynthesis protein CbiB (RefSeq), at 1,005,855 to 1,006,979 _0833 Position (kb) 1003 1004 1005 1006Strain fitness (log2 ratio) -2 -1 0 1at 1002.913 kb on + strand, within DvMF_0830at 1002.985 kb on + strand, within DvMF_0830at 1002.993 kb on - strand, within DvMF_0830at 1003.000 kb on + strand, within DvMF_0830at 1003.113 kb on - strand, within DvMF_0830at 1003.147 kb on + strand, within DvMF_0830at 1003.324 kb on + strand, within DvMF_0830at 1003.329 kb on + strand, within DvMF_0830at 1003.362 kb on - strand, within DvMF_0830at 1003.459 kb on + strandat 1003.477 kb on - strandat 1003.796 kb on - strandat 1003.863 kb on - strandat 1003.965 kb on + strand, within DvMF_0831at 1003.997 kb on + strand, within DvMF_0831at 1003.997 kb on + strand, within DvMF_0831at 1004.005 kb on - strand, within DvMF_0831at 1004.085 kb on + strand, within DvMF_0831at 1004.210 kb on - strand, within DvMF_0831at 1004.212 kb on + strand, within DvMF_0831at 1004.212 kb on + strand, within DvMF_0831at 1004.233 kb on + strand, within DvMF_0831at 1004.505 kb on + strand, within DvMF_0831at 1004.742 kb on + strand, within DvMF_0831at 1004.742 kb on + strand, within DvMF_0831at 1004.743 kb on - strand, within DvMF_0831at 1005.042 kb on - strandat 1005.238 kb on + strandat 1005.246 kb on - strandat 1005.436 kb on + strand, within DvMF_0832at 1005.705 kb on + strandat 1005.723 kb on - strandat 1005.795 kb on + strandat 1005.838 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
remove
1,002,913 + DvMF_0830 0.48 -0.3
1,002,985 + DvMF_0830 0.54 -0.3
1,002,993 - DvMF_0830 0.55 -0.7
1,003,000 + DvMF_0830 0.55 -1.3
1,003,113 - DvMF_0830 0.64 -0.3
1,003,147 + DvMF_0830 0.67 -0.6
1,003,324 + DvMF_0830 0.81 -0.5
1,003,329 + DvMF_0830 0.81 -1.0
1,003,362 - DvMF_0830 0.84 +0.9
1,003,459 + -1.7
1,003,477 - -1.7
1,003,796 - -1.0
1,003,863 - -0.8
1,003,965 + DvMF_0831 0.12 -0.1
1,003,997 + DvMF_0831 0.14 +0.2
1,003,997 + DvMF_0831 0.14 -0.9
1,004,005 - DvMF_0831 0.15 -0.6
1,004,085 + DvMF_0831 0.21 -0.7
1,004,210 - DvMF_0831 0.30 -0.8
1,004,212 + DvMF_0831 0.30 +0.3
1,004,212 + DvMF_0831 0.30 +1.0
1,004,233 + DvMF_0831 0.32 -0.8
1,004,505 + DvMF_0831 0.52 -0.5
1,004,742 + DvMF_0831 0.69 -0.3
1,004,742 + DvMF_0831 0.69 +0.0
1,004,743 - DvMF_0831 0.69 +0.1
1,005,042 - -0.8
1,005,238 + -0.7
1,005,246 - -2.2
1,005,436 + DvMF_0832 0.47 +0.3
1,005,705 + -0.5
1,005,723 - -0.6
1,005,795 + -0.9
1,005,838 - -0.6

Or see this region's nucleotide sequence