Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0830 and DvMF_0831 are separated by 236 nucleotides DvMF_0831 and DvMF_0832 are separated by 151 nucleotides DvMF_0832 and DvMF_0833 are separated by 278 nucleotides
DvMF_0830: DvMF_0830 - HI0933 family protein (RefSeq), at 1,002,304 to 1,003,563
_0830
DvMF_0831: DvMF_0831 - protein of unknown function DUF21 (RefSeq), at 1,003,800 to 1,005,158
_0831
DvMF_0832: DvMF_0832 - hypothetical protein (RefSeq), at 1,005,310 to 1,005,576
_0832
DvMF_0833: DvMF_0833 - cobalamin biosynthesis protein CbiB (RefSeq), at 1,005,855 to 1,006,979
_0833
Position (kb)
1003
1004
1005
1006 Strain fitness (log2 ratio)
-2
-1
0
1 at 1002.913 kb on + strand, within DvMF_0830 at 1002.985 kb on + strand, within DvMF_0830 at 1002.993 kb on - strand, within DvMF_0830 at 1003.000 kb on + strand, within DvMF_0830 at 1003.113 kb on - strand, within DvMF_0830 at 1003.147 kb on + strand, within DvMF_0830 at 1003.324 kb on + strand, within DvMF_0830 at 1003.329 kb on + strand, within DvMF_0830 at 1003.362 kb on - strand, within DvMF_0830 at 1003.459 kb on + strand at 1003.477 kb on - strand at 1003.796 kb on - strand at 1003.863 kb on - strand at 1003.965 kb on + strand, within DvMF_0831 at 1003.997 kb on + strand, within DvMF_0831 at 1003.997 kb on + strand, within DvMF_0831 at 1004.005 kb on - strand, within DvMF_0831 at 1004.085 kb on + strand, within DvMF_0831 at 1004.210 kb on - strand, within DvMF_0831 at 1004.212 kb on + strand, within DvMF_0831 at 1004.212 kb on + strand, within DvMF_0831 at 1004.233 kb on + strand, within DvMF_0831 at 1004.505 kb on + strand, within DvMF_0831 at 1004.742 kb on + strand, within DvMF_0831 at 1004.742 kb on + strand, within DvMF_0831 at 1004.743 kb on - strand, within DvMF_0831 at 1005.042 kb on - strand at 1005.238 kb on + strand at 1005.246 kb on - strand at 1005.436 kb on + strand, within DvMF_0832 at 1005.705 kb on + strand at 1005.723 kb on - strand at 1005.795 kb on + strand at 1005.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 1,002,913 + DvMF_0830 0.48 -0.3 1,002,985 + DvMF_0830 0.54 -0.3 1,002,993 - DvMF_0830 0.55 -0.7 1,003,000 + DvMF_0830 0.55 -1.3 1,003,113 - DvMF_0830 0.64 -0.3 1,003,147 + DvMF_0830 0.67 -0.6 1,003,324 + DvMF_0830 0.81 -0.5 1,003,329 + DvMF_0830 0.81 -1.0 1,003,362 - DvMF_0830 0.84 +0.9 1,003,459 + -1.7 1,003,477 - -1.7 1,003,796 - -1.0 1,003,863 - -0.8 1,003,965 + DvMF_0831 0.12 -0.1 1,003,997 + DvMF_0831 0.14 +0.2 1,003,997 + DvMF_0831 0.14 -0.9 1,004,005 - DvMF_0831 0.15 -0.6 1,004,085 + DvMF_0831 0.21 -0.7 1,004,210 - DvMF_0831 0.30 -0.8 1,004,212 + DvMF_0831 0.30 +0.3 1,004,212 + DvMF_0831 0.30 +1.0 1,004,233 + DvMF_0831 0.32 -0.8 1,004,505 + DvMF_0831 0.52 -0.5 1,004,742 + DvMF_0831 0.69 -0.3 1,004,742 + DvMF_0831 0.69 +0.0 1,004,743 - DvMF_0831 0.69 +0.1 1,005,042 - -0.8 1,005,238 + -0.7 1,005,246 - -2.2 1,005,436 + DvMF_0832 0.47 +0.3 1,005,705 + -0.5 1,005,723 - -0.6 1,005,795 + -0.9 1,005,838 - -0.6
Or see this region's nucleotide sequence