Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0808 and DvMF_0809 are separated by 449 nucleotides DvMF_0809 and DvMF_0810 are separated by 155 nucleotides
DvMF_0808: DvMF_0808 - transcriptional regulator, AraC family (RefSeq), at 974,173 to 974,967
_0808
DvMF_0809: DvMF_0809 - glycerol kinase (RefSeq), at 975,417 to 976,910
_0809
DvMF_0810: DvMF_0810 - major intrinsic protein (RefSeq), at 977,066 to 977,824
_0810
Position (kb) 975
976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 974.428 kb on + strand, within DvMF_0808 at 974.446 kb on + strand, within DvMF_0808 at 974.557 kb on - strand, within DvMF_0808 at 974.675 kb on - strand, within DvMF_0808 at 974.739 kb on - strand, within DvMF_0808 at 974.779 kb on - strand, within DvMF_0808 at 974.951 kb on - strand at 975.441 kb on - strand at 975.483 kb on + strand at 975.614 kb on + strand, within DvMF_0809 at 975.696 kb on + strand, within DvMF_0809 at 975.790 kb on + strand, within DvMF_0809 at 975.824 kb on + strand, within DvMF_0809 at 975.824 kb on + strand, within DvMF_0809 at 975.832 kb on - strand at 976.003 kb on + strand, within DvMF_0809 at 976.093 kb on + strand, within DvMF_0809 at 976.272 kb on - strand, within DvMF_0809 at 976.482 kb on + strand, within DvMF_0809 at 976.615 kb on + strand, within DvMF_0809 at 976.644 kb on + strand, within DvMF_0809 at 976.746 kb on - strand, within DvMF_0809 at 977.079 kb on + strand at 977.189 kb on - strand, within DvMF_0810 at 977.191 kb on + strand, within DvMF_0810 at 977.255 kb on + strand, within DvMF_0810 at 977.272 kb on + strand, within DvMF_0810 at 977.421 kb on - strand, within DvMF_0810 at 977.556 kb on + strand, within DvMF_0810
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 974,428 + DvMF_0808 0.32 -0.4 974,446 + DvMF_0808 0.34 -0.9 974,557 - DvMF_0808 0.48 -0.3 974,675 - DvMF_0808 0.63 -0.9 974,739 - DvMF_0808 0.71 -0.4 974,779 - DvMF_0808 0.76 -2.8 974,951 - -0.6 975,441 - +1.7 975,483 + +1.5 975,614 + DvMF_0809 0.13 +2.4 975,696 + DvMF_0809 0.19 +2.4 975,790 + DvMF_0809 0.25 +2.1 975,824 + DvMF_0809 0.27 +1.7 975,824 + DvMF_0809 0.27 +2.3 975,832 - +0.9 976,003 + DvMF_0809 0.39 +2.2 976,093 + DvMF_0809 0.45 +2.2 976,272 - DvMF_0809 0.57 +2.5 976,482 + DvMF_0809 0.71 +0.5 976,615 + DvMF_0809 0.80 +2.8 976,644 + DvMF_0809 0.82 +0.1 976,746 - DvMF_0809 0.89 +2.3 977,079 + +0.7 977,189 - DvMF_0810 0.16 +0.8 977,191 + DvMF_0810 0.16 -0.1 977,255 + DvMF_0810 0.25 +0.9 977,272 + DvMF_0810 0.27 +0.4 977,421 - DvMF_0810 0.47 +0.3 977,556 + DvMF_0810 0.65 -1.2
Or see this region's nucleotide sequence