Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0789 and DvMF_0790 are separated by 206 nucleotides DvMF_0790 and DvMF_0791 are separated by 181 nucleotides DvMF_0791 and DvMF_0792 are separated by 753 nucleotides
DvMF_0789: DvMF_0789 - Non-specific serine/threonine protein kinase (RefSeq), at 949,088 to 952,297
_0789
DvMF_0790: DvMF_0790 - hypothetical protein (RefSeq), at 952,504 to 952,866
_0790
DvMF_0791: DvMF_0791 - no description, at 953,048 to 954,794
_0791
DvMF_0792: DvMF_0792 - CheW protein (RefSeq), at 955,548 to 956,042
_0792
Position (kb) 953
954
955 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 952.294 kb on + strand at 952.364 kb on - strand at 952.479 kb on + strand at 952.638 kb on + strand, within DvMF_0790 at 952.639 kb on + strand, within DvMF_0790 at 953.045 kb on + strand at 953.091 kb on - strand at 953.144 kb on - strand at 953.160 kb on + strand at 953.160 kb on + strand at 953.160 kb on + strand at 953.332 kb on - strand, within DvMF_0791 at 953.455 kb on + strand, within DvMF_0791 at 953.550 kb on + strand, within DvMF_0791 at 953.568 kb on - strand, within DvMF_0791 at 953.986 kb on + strand, within DvMF_0791 at 954.191 kb on - strand, within DvMF_0791 at 954.357 kb on - strand, within DvMF_0791 at 954.387 kb on - strand, within DvMF_0791 at 955.077 kb on + strand at 955.156 kb on + strand at 955.372 kb on - strand at 955.382 kb on - strand at 955.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 952,294 + -0.5 952,364 - -1.2 952,479 + -1.6 952,638 + DvMF_0790 0.37 +0.1 952,639 + DvMF_0790 0.37 -0.5 953,045 + -0.7 953,091 - -1.3 953,144 - -0.2 953,160 + -1.1 953,160 + -2.9 953,160 + -2.4 953,332 - DvMF_0791 0.16 -0.5 953,455 + DvMF_0791 0.23 -2.3 953,550 + DvMF_0791 0.29 -1.0 953,568 - DvMF_0791 0.30 -1.3 953,986 + DvMF_0791 0.54 -1.5 954,191 - DvMF_0791 0.65 -0.0 954,357 - DvMF_0791 0.75 -1.0 954,387 - DvMF_0791 0.77 -1.4 955,077 + +0.7 955,156 + -1.9 955,372 - -1.3 955,382 - +0.1 955,405 - -0.7
Or see this region's nucleotide sequence