Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0754

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0752 and DvMF_0753 are separated by 285 nucleotidesDvMF_0753 and DvMF_0754 overlap by 35 nucleotidesDvMF_0754 and DvMF_0755 are separated by 42 nucleotidesDvMF_0755 and DvMF_R0021 are separated by 288 nucleotidesDvMF_R0021 and DvMF_0756 are separated by 111 nucleotides DvMF_0752: DvMF_0752 - hypothetical protein (RefSeq), at 899,136 to 899,693 _0752 DvMF_0753: DvMF_0753 - hypothetical protein (RefSeq), at 899,979 to 900,185 _0753 DvMF_0754: DvMF_0754 - putative DNA modification protein (RefSeq), at 900,151 to 900,882 _0754 DvMF_0755: DvMF_0755 - hypothetical protein (RefSeq), at 900,925 to 901,131 _0755 DvMF_R0021: DvMF_R0021 - tRNA-Met (RefSeq), at 901,420 to 901,496 _R0021 DvMF_0756: DvMF_0756 - glycosyl transferase family 2 (RefSeq), at 901,608 to 902,336 _0756 Position (kb) 900 901Strain fitness (log2 ratio) -2 -1 0 1at 899.158 kb on - strandat 899.211 kb on - strand, within DvMF_0752at 899.219 kb on - strand, within DvMF_0752at 899.248 kb on - strand, within DvMF_0752at 899.930 kb on - strandat 899.931 kb on - strandat 900.161 kb on - strandat 900.161 kb on - strandat 900.161 kb on - strandat 900.194 kb on - strandat 900.199 kb on + strandat 900.553 kb on + strand, within DvMF_0754at 900.688 kb on + strand, within DvMF_0754at 900.792 kb on + strand, within DvMF_0754at 900.832 kb on + strandat 901.055 kb on - strand, within DvMF_0755at 901.137 kb on + strandat 901.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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899,158 - -0.9
899,211 - DvMF_0752 0.13 -2.3
899,219 - DvMF_0752 0.15 -0.5
899,248 - DvMF_0752 0.20 -1.0
899,930 - -1.1
899,931 - -0.5
900,161 - -2.2
900,161 - -1.2
900,161 - -1.0
900,194 - -1.0
900,199 + -0.3
900,553 + DvMF_0754 0.55 -0.7
900,688 + DvMF_0754 0.73 +0.3
900,792 + DvMF_0754 0.88 -0.8
900,832 + -1.3
901,055 - DvMF_0755 0.63 -1.6
901,137 + -2.5
901,541 - -1.8

Or see this region's nucleotide sequence