Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0623 and DvMF_0624 are separated by 18 nucleotides DvMF_0624 and DvMF_0625 are separated by 13 nucleotides DvMF_0625 and DvMF_0626 are separated by 77 nucleotides
DvMF_0623: DvMF_0623 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 745,468 to 746,037
_0623
DvMF_0624: DvMF_0624 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 746,056 to 747,297
_0624
DvMF_0625: DvMF_0625 - protein of unknown function DUF1641 (RefSeq), at 747,311 to 748,012
_0625
DvMF_0626: DvMF_0626 - response regulator receiver protein (RefSeq), at 748,090 to 748,476
_0626
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 745.184 kb on - strand at 745.519 kb on + strand at 745.519 kb on + strand at 745.522 kb on - strand at 745.529 kb on + strand, within DvMF_0623 at 745.962 kb on - strand, within DvMF_0623 at 746.023 kb on + strand at 746.031 kb on - strand at 746.204 kb on - strand, within DvMF_0624 at 746.204 kb on - strand, within DvMF_0624 at 746.227 kb on - strand, within DvMF_0624 at 746.636 kb on - strand, within DvMF_0624 at 747.055 kb on - strand, within DvMF_0624 at 747.142 kb on - strand, within DvMF_0624 at 747.210 kb on - strand at 747.270 kb on + strand at 747.435 kb on + strand, within DvMF_0625 at 747.602 kb on + strand, within DvMF_0625 at 747.621 kb on - strand, within DvMF_0625 at 747.888 kb on + strand, within DvMF_0625 at 747.917 kb on - strand, within DvMF_0625 at 748.190 kb on + strand, within DvMF_0626
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 745,184 - -0.6 745,519 + -1.5 745,519 + +0.9 745,522 - -2.6 745,529 + DvMF_0623 0.11 +0.5 745,962 - DvMF_0623 0.87 -0.1 746,023 + -2.2 746,031 - -0.9 746,204 - DvMF_0624 0.12 +0.1 746,204 - DvMF_0624 0.12 -0.9 746,227 - DvMF_0624 0.14 -3.6 746,636 - DvMF_0624 0.47 -2.1 747,055 - DvMF_0624 0.80 -0.7 747,142 - DvMF_0624 0.87 -1.8 747,210 - -1.6 747,270 + -0.5 747,435 + DvMF_0625 0.18 -0.9 747,602 + DvMF_0625 0.41 -0.5 747,621 - DvMF_0625 0.44 +0.2 747,888 + DvMF_0625 0.82 -0.3 747,917 - DvMF_0625 0.86 -1.4 748,190 + DvMF_0626 0.26 -0.2
Or see this region's nucleotide sequence