Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0584

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0582 and DvMF_0583 are separated by 138 nucleotidesDvMF_0583 and hemC are separated by 43 nucleotideshemC and DvMF_0585 are separated by 128 nucleotides DvMF_0582: DvMF_0582 - phosphoheptose isomerase (RefSeq), at 690,727 to 691,353 _0582 DvMF_0583: DvMF_0583 - regulatory protein, FmdB family (RefSeq), at 691,492 to 691,728 _0583 DvMF_0584: hemC - porphobilinogen deaminase (RefSeq), at 691,772 to 692,725 hemC DvMF_0585: DvMF_0585 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 692,854 to 694,632 _0585 Position (kb) 691 692 693Strain fitness (log2 ratio) -1 0 1at 692.794 kb on + strandat 693.485 kb on + strand, within DvMF_0585at 693.488 kb on - strand, within DvMF_0585at 693.493 kb on - strand, within DvMF_0585at 693.582 kb on + strand, within DvMF_0585at 693.614 kb on - strand, within DvMF_0585

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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692,794 + -0.2
693,485 + DvMF_0585 0.35 -0.7
693,488 - DvMF_0585 0.36 -1.4
693,493 - DvMF_0585 0.36 -1.0
693,582 + DvMF_0585 0.41 -1.2
693,614 - DvMF_0585 0.43 -0.5

Or see this region's nucleotide sequence