Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0400

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0399 and DvMF_0400 are separated by 392 nucleotidesDvMF_0400 and DvMF_0401 overlap by 8 nucleotidesDvMF_0401 and DvMF_0402 are separated by 1 nucleotides DvMF_0399: DvMF_0399 - multiple antibiotic resistance (MarC)-related protein (RefSeq), at 470,028 to 470,630 _0399 DvMF_0400: DvMF_0400 - putative lipoprotein (RefSeq), at 471,023 to 471,763 _0400 DvMF_0401: DvMF_0401 - Thioredoxin-disulfide reductase (RefSeq), at 471,756 to 472,679 _0401 DvMF_0402: DvMF_0402 - thioredoxin (RefSeq), at 472,681 to 473,004 _0402 Position (kb) 471 472Strain fitness (log2 ratio) -3 -2 -1 0 1at 470.116 kb on - strand, within DvMF_0399at 470.678 kb on + strandat 471.014 kb on - strandat 471.778 kb on - strandat 472.037 kb on - strand, within DvMF_0401at 472.473 kb on - strand, within DvMF_0401at 472.567 kb on + strand, within DvMF_0401

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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470,116 - DvMF_0399 0.15 +0.4
470,678 + -0.8
471,014 - -0.7
471,778 - -3.4
472,037 - DvMF_0401 0.30 -0.6
472,473 - DvMF_0401 0.78 -0.6
472,567 + DvMF_0401 0.88 -1.4

Or see this region's nucleotide sequence