Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0356 and DvMF_0357 are separated by 12 nucleotides DvMF_0357 and DvMF_0358 are separated by 275 nucleotides
DvMF_0356: DvMF_0356 - Tetratricopeptide TPR_4 (RefSeq), at 415,905 to 417,113
_0356
DvMF_0357: DvMF_0357 - histidine triad (HIT) protein (RefSeq), at 417,126 to 418,022
_0357
DvMF_0358: DvMF_0358 - CBS domain containing protein (RefSeq), at 418,298 to 421,531
_0358
Position (kb) 417
418
419 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 416.237 kb on + strand, within DvMF_0356 at 416.415 kb on - strand, within DvMF_0356 at 416.508 kb on - strand, within DvMF_0356 at 416.508 kb on - strand, within DvMF_0356 at 416.554 kb on + strand, within DvMF_0356 at 416.562 kb on - strand, within DvMF_0356 at 416.598 kb on + strand, within DvMF_0356 at 416.722 kb on - strand, within DvMF_0356 at 416.880 kb on + strand, within DvMF_0356 at 416.989 kb on - strand, within DvMF_0356 at 417.089 kb on + strand at 417.097 kb on - strand at 417.099 kb on + strand at 417.603 kb on - strand, within DvMF_0357 at 417.603 kb on - strand, within DvMF_0357 at 417.760 kb on + strand, within DvMF_0357 at 417.766 kb on + strand, within DvMF_0357 at 417.844 kb on + strand, within DvMF_0357 at 417.869 kb on - strand, within DvMF_0357 at 417.914 kb on - strand, within DvMF_0357 at 417.914 kb on - strand, within DvMF_0357 at 418.125 kb on - strand at 418.125 kb on - strand at 418.125 kb on - strand at 418.239 kb on + strand at 418.274 kb on + strand at 418.358 kb on + strand at 418.415 kb on + strand at 418.492 kb on - strand at 418.507 kb on + strand at 418.541 kb on + strand at 418.818 kb on + strand, within DvMF_0358 at 418.908 kb on + strand, within DvMF_0358 at 418.925 kb on + strand, within DvMF_0358
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 416,237 + DvMF_0356 0.27 -2.6 416,415 - DvMF_0356 0.42 -1.4 416,508 - DvMF_0356 0.50 -1.2 416,508 - DvMF_0356 0.50 -0.4 416,554 + DvMF_0356 0.54 -0.3 416,562 - DvMF_0356 0.54 -0.3 416,598 + DvMF_0356 0.57 +0.3 416,722 - DvMF_0356 0.68 -0.3 416,880 + DvMF_0356 0.81 -0.8 416,989 - DvMF_0356 0.90 -0.6 417,089 + -0.6 417,097 - -1.3 417,099 + -0.4 417,603 - DvMF_0357 0.53 -3.5 417,603 - DvMF_0357 0.53 -4.0 417,760 + DvMF_0357 0.71 -2.3 417,766 + DvMF_0357 0.71 -2.7 417,844 + DvMF_0357 0.80 -0.7 417,869 - DvMF_0357 0.83 -2.2 417,914 - DvMF_0357 0.88 -1.7 417,914 - DvMF_0357 0.88 -1.6 418,125 - -0.7 418,125 - +0.2 418,125 - -0.8 418,239 + +0.1 418,274 + -1.6 418,358 + -0.8 418,415 + -1.5 418,492 - -0.1 418,507 + -1.3 418,541 + -0.9 418,818 + DvMF_0358 0.16 -3.2 418,908 + DvMF_0358 0.19 -1.9 418,925 + DvMF_0358 0.19 -2.6
Or see this region's nucleotide sequence