Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0331

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0330 and DvMF_0331 are separated by 1 nucleotidesDvMF_0331 and DvMF_0332 are separated by 5 nucleotides DvMF_0330: DvMF_0330 - iron-containing alcohol dehydrogenase (RefSeq), at 384,682 to 385,824 _0330 DvMF_0331: DvMF_0331 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 385,826 to 387,151 _0331 DvMF_0332: DvMF_0332 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 387,157 to 388,566 _0332 Position (kb) 385 386 387 388Strain fitness (log2 ratio) -2 -1 0 1at 384.930 kb on - strand, within DvMF_0330at 384.949 kb on - strand, within DvMF_0330at 385.416 kb on - strand, within DvMF_0330at 385.498 kb on + strand, within DvMF_0330at 385.508 kb on + strand, within DvMF_0330at 385.635 kb on + strand, within DvMF_0330at 385.823 kb on - strandat 386.104 kb on + strand, within DvMF_0331at 386.495 kb on - strand, within DvMF_0331at 386.600 kb on - strand, within DvMF_0331at 386.606 kb on - strand, within DvMF_0331at 386.606 kb on - strand, within DvMF_0331at 386.618 kb on + strand, within DvMF_0331at 386.663 kb on - strand, within DvMF_0331at 386.689 kb on + strand, within DvMF_0331at 386.773 kb on + strand, within DvMF_0331at 386.785 kb on + strand, within DvMF_0331at 386.788 kb on - strand, within DvMF_0331at 386.822 kb on - strand, within DvMF_0331at 386.846 kb on + strand, within DvMF_0331at 386.883 kb on + strand, within DvMF_0331at 387.153 kb on - strandat 387.299 kb on + strand, within DvMF_0332at 387.433 kb on - strand, within DvMF_0332at 387.505 kb on - strand, within DvMF_0332at 387.616 kb on - strand, within DvMF_0332at 387.695 kb on - strand, within DvMF_0332at 387.798 kb on + strand, within DvMF_0332

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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384,930 - DvMF_0330 0.22 -0.4
384,949 - DvMF_0330 0.23 -0.5
385,416 - DvMF_0330 0.64 -0.5
385,498 + DvMF_0330 0.71 -0.6
385,508 + DvMF_0330 0.72 -0.8
385,635 + DvMF_0330 0.83 -0.9
385,823 - -0.8
386,104 + DvMF_0331 0.21 -0.6
386,495 - DvMF_0331 0.50 -0.1
386,600 - DvMF_0331 0.58 -1.7
386,606 - DvMF_0331 0.59 -0.7
386,606 - DvMF_0331 0.59 -0.2
386,618 + DvMF_0331 0.60 -1.0
386,663 - DvMF_0331 0.63 -1.1
386,689 + DvMF_0331 0.65 -0.7
386,773 + DvMF_0331 0.71 -1.0
386,785 + DvMF_0331 0.72 -1.4
386,788 - DvMF_0331 0.73 -0.6
386,822 - DvMF_0331 0.75 -1.6
386,846 + DvMF_0331 0.77 +0.3
386,883 + DvMF_0331 0.80 -0.9
387,153 - -2.5
387,299 + DvMF_0332 0.10 -0.6
387,433 - DvMF_0332 0.20 +0.5
387,505 - DvMF_0332 0.25 -1.1
387,616 - DvMF_0332 0.33 -0.0
387,695 - DvMF_0332 0.38 -0.3
387,798 + DvMF_0332 0.45 -0.7

Or see this region's nucleotide sequence