Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0303 and DvMF_0304 are separated by 73 nucleotides DvMF_0304 and DvMF_0305 are separated by 267 nucleotides
DvMF_0303: DvMF_0303 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 348,603 to 350,378
_0303
DvMF_0304: DvMF_0304 - putative cache sensor protein (RefSeq), at 350,452 to 350,910
_0304
DvMF_0305: DvMF_0305 - split soret cytochrome c precursor (RefSeq), at 351,178 to 352,026
_0305
Position (kb) 350
351 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 349.503 kb on - strand, within DvMF_0303 at 349.752 kb on + strand, within DvMF_0303 at 349.752 kb on + strand, within DvMF_0303 at 349.757 kb on + strand, within DvMF_0303 at 349.757 kb on + strand, within DvMF_0303 at 349.765 kb on - strand, within DvMF_0303 at 349.877 kb on - strand, within DvMF_0303 at 349.877 kb on - strand, within DvMF_0303 at 350.019 kb on - strand, within DvMF_0303 at 350.064 kb on + strand, within DvMF_0303 at 350.072 kb on - strand, within DvMF_0303 at 350.072 kb on - strand, within DvMF_0303 at 350.175 kb on + strand, within DvMF_0303 at 350.380 kb on + strand at 350.449 kb on - strand at 350.734 kb on - strand, within DvMF_0304 at 350.788 kb on + strand, within DvMF_0304 at 350.862 kb on + strand, within DvMF_0304 at 351.134 kb on + strand at 351.164 kb on + strand at 351.233 kb on + strand at 351.288 kb on + strand, within DvMF_0305 at 351.518 kb on + strand, within DvMF_0305 at 351.545 kb on - strand, within DvMF_0305 at 351.619 kb on - strand, within DvMF_0305 at 351.629 kb on - strand, within DvMF_0305 at 351.771 kb on + strand, within DvMF_0305 at 351.785 kb on + strand, within DvMF_0305 at 351.822 kb on - strand, within DvMF_0305 at 351.874 kb on + strand, within DvMF_0305
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 349,503 - DvMF_0303 0.51 -0.3 349,752 + DvMF_0303 0.65 -0.9 349,752 + DvMF_0303 0.65 -0.6 349,757 + DvMF_0303 0.65 -0.1 349,757 + DvMF_0303 0.65 -1.5 349,765 - DvMF_0303 0.65 -1.1 349,877 - DvMF_0303 0.72 -1.2 349,877 - DvMF_0303 0.72 -1.3 350,019 - DvMF_0303 0.80 -1.2 350,064 + DvMF_0303 0.82 -0.3 350,072 - DvMF_0303 0.83 -0.1 350,072 - DvMF_0303 0.83 -0.2 350,175 + DvMF_0303 0.89 -0.7 350,380 + -0.1 350,449 - -1.3 350,734 - DvMF_0304 0.61 -0.8 350,788 + DvMF_0304 0.73 +0.3 350,862 + DvMF_0304 0.89 +2.4 351,134 + -0.8 351,164 + +0.0 351,233 + -1.4 351,288 + DvMF_0305 0.13 -4.2 351,518 + DvMF_0305 0.40 -0.1 351,545 - DvMF_0305 0.43 +1.3 351,619 - DvMF_0305 0.52 -1.5 351,629 - DvMF_0305 0.53 -1.4 351,771 + DvMF_0305 0.70 -1.1 351,785 + DvMF_0305 0.71 -0.3 351,822 - DvMF_0305 0.76 -1.5 351,874 + DvMF_0305 0.82 -0.8
Or see this region's nucleotide sequence