Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0141

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0139 and DvMF_0140 are separated by 66 nucleotidesDvMF_0140 and DvMF_0141 overlap by 4 nucleotidesDvMF_0141 and DvMF_0142 are separated by 365 nucleotides DvMF_0139: DvMF_0139 - nucleoside recognition domain protein (RefSeq), at 155,322 to 156,305 _0139 DvMF_0140: DvMF_0140 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 156,372 to 157,253 _0140 DvMF_0141: DvMF_0141 - dTDP-glucose 4,6-dehydratase (RefSeq), at 157,250 to 158,272 _0141 DvMF_0142: DvMF_0142 - anaerobic cobalt chelatase (RefSeq), at 158,638 to 159,510 _0142 Position (kb) 157 158 159Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 156.322 kb on + strandat 156.793 kb on - strand, within DvMF_0140at 156.815 kb on - strand, within DvMF_0140at 156.851 kb on + strand, within DvMF_0140at 157.138 kb on - strand, within DvMF_0140at 158.339 kb on - strandat 158.426 kb on + strandat 158.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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156,322 + -0.9
156,793 - DvMF_0140 0.48 +1.9
156,815 - DvMF_0140 0.50 +4.8
156,851 + DvMF_0140 0.54 -1.8
157,138 - DvMF_0140 0.87 +2.3
158,339 - -0.8
158,426 + -0.2
158,504 + -1.5

Or see this region's nucleotide sequence