Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0032 and DvMF_0033 are separated by 120 nucleotides DvMF_0033 and DvMF_0034 are separated by 333 nucleotides
DvMF_0032: DvMF_0032 - diguanylate cyclase (RefSeq), at 39,790 to 41,526
_0032
DvMF_0033: DvMF_0033 - no description, at 41,647 to 43,079
_0033
DvMF_0034: DvMF_0034 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 43,413 to 45,029
_0034
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 40.670 kb on - strand, within DvMF_0032 at 40.869 kb on - strand, within DvMF_0032 at 41.020 kb on - strand, within DvMF_0032 at 41.023 kb on + strand, within DvMF_0032 at 41.052 kb on - strand, within DvMF_0032 at 41.074 kb on + strand, within DvMF_0032 at 41.858 kb on - strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.887 kb on - strand, within DvMF_0033 at 41.887 kb on - strand, within DvMF_0033 at 41.887 kb on - strand, within DvMF_0033 at 41.912 kb on - strand, within DvMF_0033 at 41.943 kb on - strand, within DvMF_0033 at 41.950 kb on - strand, within DvMF_0033 at 42.315 kb on - strand, within DvMF_0033 at 42.387 kb on + strand, within DvMF_0033 at 42.388 kb on + strand, within DvMF_0033 at 42.396 kb on - strand, within DvMF_0033 at 42.396 kb on - strand, within DvMF_0033 at 42.438 kb on - strand, within DvMF_0033 at 42.679 kb on - strand, within DvMF_0033 at 42.779 kb on - strand, within DvMF_0033 at 42.824 kb on + strand, within DvMF_0033 at 43.732 kb on - strand, within DvMF_0034 at 43.882 kb on - strand, within DvMF_0034 at 43.892 kb on - strand, within DvMF_0034 at 44.030 kb on + strand, within DvMF_0034 at 44.030 kb on - strand, within DvMF_0034 at 44.062 kb on - strand, within DvMF_0034
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 40,670 - DvMF_0032 0.51 +0.5 40,869 - DvMF_0032 0.62 -1.5 41,020 - DvMF_0032 0.71 -0.2 41,023 + DvMF_0032 0.71 -0.6 41,052 - DvMF_0032 0.73 -1.6 41,074 + DvMF_0032 0.74 -3.9 41,858 - DvMF_0033 0.15 -0.9 41,879 + DvMF_0033 0.16 -0.2 41,879 + DvMF_0033 0.16 -0.9 41,879 + DvMF_0033 0.16 +0.7 41,879 + DvMF_0033 0.16 -2.0 41,879 + DvMF_0033 0.16 -1.0 41,879 + DvMF_0033 0.16 -1.9 41,887 - DvMF_0033 0.17 +0.5 41,887 - DvMF_0033 0.17 -0.9 41,887 - DvMF_0033 0.17 +0.2 41,912 - DvMF_0033 0.18 -0.8 41,943 - DvMF_0033 0.21 -1.9 41,950 - DvMF_0033 0.21 -0.4 42,315 - DvMF_0033 0.47 -0.9 42,387 + DvMF_0033 0.52 -1.1 42,388 + DvMF_0033 0.52 -1.4 42,396 - DvMF_0033 0.52 -0.0 42,396 - DvMF_0033 0.52 -1.2 42,438 - DvMF_0033 0.55 -1.7 42,679 - DvMF_0033 0.72 -0.4 42,779 - DvMF_0033 0.79 -2.0 42,824 + DvMF_0033 0.82 -2.4 43,732 - DvMF_0034 0.20 -1.2 43,882 - DvMF_0034 0.29 -0.3 43,892 - DvMF_0034 0.30 -0.6 44,030 + DvMF_0034 0.38 -3.6 44,030 - DvMF_0034 0.38 -0.8 44,062 - DvMF_0034 0.40 -0.5
Or see this region's nucleotide sequence