Strain Fitness in Shewanella loihica PV-4 around Shew_R0090

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttsf and rpsB are separated by 119 nucleotidesrpsB and Shew_R0090 are separated by 22 nucleotidesShew_R0090 and Shew_2636 are separated by 104 nucleotidesShew_2636 and Shew_2637 are separated by 81 nucleotides Shew_2634: tsf - elongation factor Ts (RefSeq), at 3,108,700 to 3,109,548 tsf Shew_2635: rpsB - 30S ribosomal protein S2 (RefSeq), at 3,109,668 to 3,110,396 rpsB Shew_R0090: Shew_R0090 - no description, at 3,110,419 to 3,110,571 _R0090 Shew_2636: Shew_2636 - methionine aminopeptidase (RefSeq), at 3,110,676 to 3,111,473 _2636 Shew_2637: Shew_2637 - PII uridylyl-transferase (RefSeq), at 3,111,555 to 3,114,128 _2637 Position (kb) 3110 3111Strain fitness (log2 ratio) -1 0 1at 3111.504 kb on + strandat 3111.525 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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3,111,504 + +0.8
3,111,525 + +0.1

Or see this region's nucleotide sequence