Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0689 and Shew_0690 are separated by 171 nucleotides Shew_0690 and Shew_0691 are separated by 189 nucleotides
Shew_0689: Shew_0689 - hypothetical protein (RefSeq), at 782,796 to 783,626
_0689
Shew_0690: Shew_0690 - endonuclease/exonuclease/phosphatase (RefSeq), at 783,798 to 784,871
_0690
Shew_0691: Shew_0691 - hypothetical protein (RefSeq), at 785,061 to 786,194
_0691
Position (kb) 783
784
785 Strain fitness (log2 ratio) -1
0
1
2
3 at 783.331 kb on + strand, within Shew_0689 at 783.339 kb on - strand, within Shew_0689 at 783.722 kb on + strand at 783.790 kb on - strand at 783.841 kb on + strand at 783.896 kb on + strand at 783.904 kb on - strand at 784.095 kb on + strand, within Shew_0690 at 784.137 kb on - strand, within Shew_0690 at 784.605 kb on - strand, within Shew_0690 at 784.683 kb on - strand, within Shew_0690 at 784.830 kb on + strand at 784.838 kb on - strand at 785.041 kb on - strand at 785.305 kb on - strand, within Shew_0691 at 785.305 kb on - strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.376 kb on - strand, within Shew_0691 at 785.468 kb on - strand, within Shew_0691 at 785.558 kb on - strand, within Shew_0691 at 785.620 kb on + strand, within Shew_0691 at 785.620 kb on + strand, within Shew_0691 at 785.692 kb on - strand, within Shew_0691
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 783,331 + Shew_0689 0.64 +0.4 783,339 - Shew_0689 0.65 -1.0 783,722 + +0.0 783,790 - +0.2 783,841 + +0.2 783,896 + -0.3 783,904 - -0.5 784,095 + Shew_0690 0.28 -1.7 784,137 - Shew_0690 0.32 +0.1 784,605 - Shew_0690 0.75 -1.0 784,683 - Shew_0690 0.82 +0.1 784,830 + +0.9 784,838 - +0.4 785,041 - +0.2 785,305 - Shew_0691 0.22 +0.2 785,305 - Shew_0691 0.22 +0.3 785,368 + Shew_0691 0.27 +3.3 785,368 + Shew_0691 0.27 -1.7 785,368 + Shew_0691 0.27 -1.2 785,376 - Shew_0691 0.28 +0.3 785,468 - Shew_0691 0.36 +0.2 785,558 - Shew_0691 0.44 +0.0 785,620 + Shew_0691 0.49 +0.4 785,620 + Shew_0691 0.49 +1.3 785,692 - Shew_0691 0.56 +0.2
Or see this region's nucleotide sequence