Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0357 and Shew_0358 are separated by 180 nucleotides Shew_0358 and fre are separated by 69 nucleotides fre and Shew_0360 are separated by 134 nucleotides
Shew_0357: Shew_0357 - copper ABC transporter, permease protein (RefSeq), at 405,496 to 406,347
_0357
Shew_0358: Shew_0358 - transcriptional regulator, CadC (RefSeq), at 406,528 to 407,808
_0358
Shew_0359: fre - FMN reductase (RefSeq), at 407,878 to 408,576
fre
Shew_0360: Shew_0360 - UbiD family decarboxylase (RefSeq), at 408,711 to 410,192
_0360
Position (kb) 406
407
408 Strain fitness (log2 ratio) -1
0
1
2 at 405.681 kb on - strand, within Shew_0357 at 405.683 kb on + strand, within Shew_0357 at 406.026 kb on - strand, within Shew_0357 at 406.078 kb on - strand, within Shew_0357 at 406.104 kb on - strand, within Shew_0357 at 406.305 kb on + strand at 406.393 kb on - strand at 407.263 kb on - strand, within Shew_0358 at 407.503 kb on + strand, within Shew_0358 at 407.503 kb on + strand, within Shew_0358 at 407.594 kb on + strand, within Shew_0358 at 407.771 kb on - strand at 407.810 kb on - strand at 407.853 kb on + strand at 408.011 kb on - strand, within fre at 408.109 kb on - strand, within fre at 408.161 kb on - strand, within fre at 408.237 kb on + strand, within fre
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 405,681 - Shew_0357 0.22 +0.1 405,683 + Shew_0357 0.22 +1.5 406,026 - Shew_0357 0.62 -1.0 406,078 - Shew_0357 0.68 +0.1 406,104 - Shew_0357 0.71 +1.1 406,305 + +0.3 406,393 - +0.5 407,263 - Shew_0358 0.57 -0.2 407,503 + Shew_0358 0.76 -0.3 407,503 + Shew_0358 0.76 -0.7 407,594 + Shew_0358 0.83 -0.1 407,771 - +0.3 407,810 - +0.8 407,853 + +0.1 408,011 - fre Shew_0359 0.19 +1.3 408,109 - fre Shew_0359 0.33 +1.9 408,161 - fre Shew_0359 0.40 +1.8 408,237 + fre Shew_0359 0.51 +2.3
Or see this region's nucleotide sequence