Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0294 and Shew_0295 are separated by 80 nucleotides Shew_0295 and Shew_0296 are separated by 378 nucleotides Shew_0296 and Shew_0297 are separated by 89 nucleotides
Shew_0294: Shew_0294 - alanine--glyoxylate transaminase (RefSeq), at 315,341 to 316,483
_0294
Shew_0295: Shew_0295 - hypothetical protein (RefSeq), at 316,564 to 316,989
_0295
Shew_0296: Shew_0296 - heat shock protein Hsp20 (RefSeq), at 317,368 to 317,838
_0296
Shew_0297: Shew_0297 - hypothetical protein (RefSeq), at 317,928 to 319,835
_0297
Position (kb) 316
317 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 315.593 kb on - strand, within Shew_0294 at 316.006 kb on + strand, within Shew_0294 at 316.123 kb on + strand, within Shew_0294 at 316.259 kb on + strand, within Shew_0294 at 316.460 kb on + strand at 316.593 kb on + strand at 316.598 kb on + strand at 316.603 kb on + strand at 316.697 kb on - strand, within Shew_0295 at 316.705 kb on + strand, within Shew_0295 at 316.878 kb on + strand, within Shew_0295 at 316.922 kb on - strand, within Shew_0295 at 317.028 kb on + strand at 317.213 kb on + strand at 317.223 kb on + strand at 317.223 kb on + strand at 317.294 kb on + strand at 317.768 kb on + strand, within Shew_0296 at 317.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 315,593 - Shew_0294 0.22 +0.1 316,006 + Shew_0294 0.58 -0.2 316,123 + Shew_0294 0.68 -0.8 316,259 + Shew_0294 0.80 +0.4 316,460 + -0.0 316,593 + -0.1 316,598 + +0.1 316,603 + -1.9 316,697 - Shew_0295 0.31 +1.1 316,705 + Shew_0295 0.33 -0.1 316,878 + Shew_0295 0.74 -1.4 316,922 - Shew_0295 0.84 +0.4 317,028 + +0.2 317,213 + -0.5 317,223 + +0.0 317,223 + +0.3 317,294 + +0.2 317,768 + Shew_0296 0.85 +5.4 317,851 + -0.3
Or see this region's nucleotide sequence