Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0249 and Shew_0250 are separated by 10 nucleotides Shew_0250 and Shew_0251 are separated by 377 nucleotides
Shew_0249: Shew_0249 - GCN5-related N-acetyltransferase (RefSeq), at 268,052 to 268,594
_0249
Shew_0250: Shew_0250 - MerR family transcriptional regulator (RefSeq), at 268,605 to 269,783
_0250
Shew_0251: Shew_0251 - phage integrase family protein (RefSeq), at 270,161 to 270,757
_0251
Position (kb) 268
269
270 Strain fitness (log2 ratio) -2
-1
0
1 at 267.607 kb on - strand at 267.913 kb on + strand at 267.932 kb on - strand at 268.026 kb on + strand at 268.110 kb on - strand, within Shew_0249 at 268.171 kb on - strand, within Shew_0249 at 268.342 kb on - strand, within Shew_0249 at 268.507 kb on + strand, within Shew_0249 at 268.718 kb on - strand at 268.740 kb on + strand, within Shew_0250 at 268.751 kb on - strand, within Shew_0250 at 268.826 kb on + strand, within Shew_0250 at 268.996 kb on - strand, within Shew_0250 at 269.180 kb on + strand, within Shew_0250 at 269.334 kb on + strand, within Shew_0250 at 269.413 kb on - strand, within Shew_0250 at 269.423 kb on - strand, within Shew_0250 at 269.423 kb on - strand, within Shew_0250 at 269.600 kb on + strand, within Shew_0250 at 269.600 kb on + strand, within Shew_0250 at 269.608 kb on - strand, within Shew_0250 at 269.608 kb on - strand, within Shew_0250 at 269.619 kb on + strand, within Shew_0250 at 269.708 kb on + strand at 269.794 kb on + strand at 269.827 kb on - strand at 269.834 kb on + strand at 269.834 kb on + strand at 269.852 kb on - strand at 269.899 kb on - strand at 269.986 kb on + strand at 270.053 kb on + strand at 270.065 kb on - strand at 270.095 kb on + strand at 270.275 kb on + strand, within Shew_0251 at 270.283 kb on - strand, within Shew_0251 at 270.295 kb on - strand, within Shew_0251 at 270.332 kb on - strand, within Shew_0251 at 270.353 kb on + strand, within Shew_0251 at 270.446 kb on - strand, within Shew_0251 at 270.511 kb on - strand, within Shew_0251 at 270.620 kb on + strand, within Shew_0251 at 270.723 kb on - strand at 270.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 267,607 - -0.7 267,913 + +0.6 267,932 - +1.1 268,026 + +0.5 268,110 - Shew_0249 0.11 -0.1 268,171 - Shew_0249 0.22 -0.3 268,342 - Shew_0249 0.53 +0.2 268,507 + Shew_0249 0.84 +0.2 268,718 - +0.4 268,740 + Shew_0250 0.11 +0.0 268,751 - Shew_0250 0.12 +1.6 268,826 + Shew_0250 0.19 +0.1 268,996 - Shew_0250 0.33 -0.2 269,180 + Shew_0250 0.49 -0.3 269,334 + Shew_0250 0.62 +0.2 269,413 - Shew_0250 0.69 -0.4 269,423 - Shew_0250 0.69 -0.1 269,423 - Shew_0250 0.69 +0.0 269,600 + Shew_0250 0.84 -0.7 269,600 + Shew_0250 0.84 -0.7 269,608 - Shew_0250 0.85 -0.2 269,608 - Shew_0250 0.85 -2.0 269,619 + Shew_0250 0.86 -0.0 269,708 + +0.1 269,794 + -0.2 269,827 - -0.3 269,834 + +1.6 269,834 + -0.5 269,852 - +0.1 269,899 - +0.0 269,986 + -0.3 270,053 + -0.0 270,065 - +0.6 270,095 + -0.7 270,275 + Shew_0251 0.19 +0.0 270,283 - Shew_0251 0.20 +0.4 270,295 - Shew_0251 0.22 +0.2 270,332 - Shew_0251 0.29 -0.9 270,353 + Shew_0251 0.32 +0.1 270,446 - Shew_0251 0.48 +0.3 270,511 - Shew_0251 0.59 +0.4 270,620 + Shew_0251 0.77 -0.2 270,723 - +0.5 270,734 - +0.5
Or see this region's nucleotide sequence