Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23365

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23360 and RS_RS23365 are separated by 2 nucleotidesRS_RS23365 and RS_RS23370 overlap by 1 nucleotidesRS_RS23370 and RS_RS23375 overlap by 4 nucleotides RS_RS23360: RS_RS23360 - type IV pilin protein, at 1,636,604 to 1,637,071 _RS23360 RS_RS23365: RS_RS23365 - pilus assembly protein PilY, at 1,637,074 to 1,640,409 _RS23365 RS_RS23370: RS_RS23370 - pilus assembly protein PilX, at 1,640,409 to 1,640,990 _RS23370 RS_RS23375: RS_RS23375 - type 4 fimbrial biogenesis protein, at 1,640,987 to 1,641,739 _RS23375 Position (kb) 1637 1638 1639 1640 1641Strain fitness (log2 ratio) -2 -1 0 1 2at 1636.267 kb on + strandat 1636.267 kb on + strandat 1636.268 kb on - strandat 1636.665 kb on + strand, within RS_RS23360at 1636.665 kb on + strand, within RS_RS23360at 1636.665 kb on + strand, within RS_RS23360at 1636.666 kb on - strand, within RS_RS23360at 1636.666 kb on - strand, within RS_RS23360at 1636.666 kb on - strand, within RS_RS23360at 1636.770 kb on + strand, within RS_RS23360at 1636.770 kb on + strand, within RS_RS23360at 1636.770 kb on + strand, within RS_RS23360at 1636.771 kb on - strand, within RS_RS23360at 1636.780 kb on - strand, within RS_RS23360at 1636.780 kb on - strand, within RS_RS23360at 1636.780 kb on - strand, within RS_RS23360at 1636.782 kb on + strand, within RS_RS23360at 1636.782 kb on + strand, within RS_RS23360at 1636.783 kb on - strand, within RS_RS23360at 1636.783 kb on - strand, within RS_RS23360at 1636.857 kb on + strand, within RS_RS23360at 1636.857 kb on + strand, within RS_RS23360at 1636.857 kb on + strand, within RS_RS23360at 1636.879 kb on - strand, within RS_RS23360at 1636.879 kb on - strand, within RS_RS23360at 1636.947 kb on + strand, within RS_RS23360at 1636.947 kb on + strand, within RS_RS23360at 1636.947 kb on + strand, within RS_RS23360at 1636.948 kb on - strand, within RS_RS23360at 1636.948 kb on - strand, within RS_RS23360at 1636.948 kb on - strand, within RS_RS23360at 1636.948 kb on - strand, within RS_RS23360at 1636.948 kb on - strand, within RS_RS23360at 1636.957 kb on - strand, within RS_RS23360at 1637.252 kb on + strandat 1637.253 kb on - strandat 1637.253 kb on - strandat 1637.333 kb on + strandat 1637.429 kb on + strand, within RS_RS23365at 1637.429 kb on + strand, within RS_RS23365at 1637.429 kb on + strand, within RS_RS23365at 1637.430 kb on - strand, within RS_RS23365at 1637.430 kb on - strand, within RS_RS23365at 1637.430 kb on - strand, within RS_RS23365at 1637.430 kb on - strand, within RS_RS23365at 1637.430 kb on - strand, within RS_RS23365at 1637.430 kb on - strand, within RS_RS23365at 1637.444 kb on + strand, within RS_RS23365at 1637.445 kb on - strand, within RS_RS23365at 1637.445 kb on - strand, within RS_RS23365at 1637.661 kb on - strand, within RS_RS23365at 1637.661 kb on - strand, within RS_RS23365at 1637.721 kb on - strand, within RS_RS23365at 1637.745 kb on - strand, within RS_RS23365at 1637.745 kb on - strand, within RS_RS23365at 1637.972 kb on + strand, within RS_RS23365at 1637.973 kb on - strand, within RS_RS23365at 1637.973 kb on - strand, within RS_RS23365at 1637.973 kb on - strand, within RS_RS23365at 1637.978 kb on + strand, within RS_RS23365at 1637.979 kb on - strand, within RS_RS23365at 1637.979 kb on - strand, within RS_RS23365at 1637.979 kb on - strand, within RS_RS23365at 1638.020 kb on + strand, within RS_RS23365at 1638.020 kb on + strand, within RS_RS23365at 1638.021 kb on - strand, within RS_RS23365at 1638.021 kb on - strand, within RS_RS23365at 1638.086 kb on + strand, within RS_RS23365at 1638.089 kb on + strand, within RS_RS23365at 1638.225 kb on - strand, within RS_RS23365at 1638.229 kb on - strand, within RS_RS23365at 1638.229 kb on - strand, within RS_RS23365at 1638.229 kb on - strand, within RS_RS23365at 1638.239 kb on + strand, within RS_RS23365at 1638.276 kb on + strand, within RS_RS23365at 1638.277 kb on - strand, within RS_RS23365at 1638.356 kb on + strand, within RS_RS23365at 1638.356 kb on + strand, within RS_RS23365at 1638.356 kb on + strand, within RS_RS23365at 1638.357 kb on - strand, within RS_RS23365at 1638.357 kb on - strand, within RS_RS23365at 1638.458 kb on + strand, within RS_RS23365at 1638.458 kb on + strand, within RS_RS23365at 1638.458 kb on + strand, within RS_RS23365at 1638.459 kb on - strand, within RS_RS23365at 1638.459 kb on - strand, within RS_RS23365at 1638.461 kb on + strand, within RS_RS23365at 1638.495 kb on - strand, within RS_RS23365at 1638.578 kb on + strand, within RS_RS23365at 1638.578 kb on + strand, within RS_RS23365at 1638.578 kb on + strand, within RS_RS23365at 1638.579 kb on - strand, within RS_RS23365at 1638.579 kb on - strand, within RS_RS23365at 1638.579 kb on - strand, within RS_RS23365at 1638.579 kb on - strand, within RS_RS23365at 1638.645 kb on - strand, within RS_RS23365at 1638.692 kb on + strand, within RS_RS23365at 1638.692 kb on + strand, within RS_RS23365at 1638.692 kb on + strand, within RS_RS23365at 1638.693 kb on - strand, within RS_RS23365at 1638.693 kb on - strand, within RS_RS23365at 1638.693 kb on - strand, within RS_RS23365at 1638.717 kb on - strand, within RS_RS23365at 1638.717 kb on - strand, within RS_RS23365at 1638.737 kb on + strand, within RS_RS23365at 1638.737 kb on + strand, within RS_RS23365at 1638.737 kb on + strand, within RS_RS23365at 1638.737 kb on + strand, within RS_RS23365at 1638.738 kb on - strand, within RS_RS23365at 1638.801 kb on - strand, within RS_RS23365at 1638.801 kb on - strand, within RS_RS23365at 1638.875 kb on + strand, within RS_RS23365at 1638.920 kb on + strand, within RS_RS23365at 1638.921 kb on - strand, within RS_RS23365at 1639.217 kb on + strand, within RS_RS23365at 1639.217 kb on + strand, within RS_RS23365at 1639.217 kb on + strand, within RS_RS23365at 1639.218 kb on - strand, within RS_RS23365at 1639.220 kb on + strand, within RS_RS23365at 1639.220 kb on + strand, within RS_RS23365at 1639.220 kb on + strand, within RS_RS23365at 1639.457 kb on + strand, within RS_RS23365at 1639.499 kb on + strand, within RS_RS23365at 1639.499 kb on + strand, within RS_RS23365at 1639.499 kb on + strand, within RS_RS23365at 1639.500 kb on - strand, within RS_RS23365at 1639.500 kb on - strand, within RS_RS23365at 1639.500 kb on - strand, within RS_RS23365at 1639.586 kb on + strand, within RS_RS23365at 1639.586 kb on + strand, within RS_RS23365at 1639.586 kb on + strand, within RS_RS23365at 1639.587 kb on - strand, within RS_RS23365at 1639.587 kb on - strand, within RS_RS23365at 1639.592 kb on + strand, within RS_RS23365at 1639.592 kb on + strand, within RS_RS23365at 1639.592 kb on + strand, within RS_RS23365at 1639.593 kb on - strand, within RS_RS23365at 1639.593 kb on - strand, within RS_RS23365at 1639.593 kb on - strand, within RS_RS23365at 1639.599 kb on - strand, within RS_RS23365at 1639.649 kb on + strand, within RS_RS23365at 1639.650 kb on - strand, within RS_RS23365at 1639.718 kb on + strand, within RS_RS23365at 1639.719 kb on - strand, within RS_RS23365at 1639.721 kb on + strand, within RS_RS23365at 1639.722 kb on - strand, within RS_RS23365at 1639.730 kb on + strand, within RS_RS23365at 1639.866 kb on + strand, within RS_RS23365at 1639.867 kb on - strand, within RS_RS23365at 1639.868 kb on + strand, within RS_RS23365at 1639.889 kb on + strand, within RS_RS23365at 1639.889 kb on + strand, within RS_RS23365at 1639.889 kb on + strand, within RS_RS23365at 1639.889 kb on + strand, within RS_RS23365at 1640.006 kb on + strand, within RS_RS23365at 1640.006 kb on + strand, within RS_RS23365at 1640.007 kb on - strand, within RS_RS23365at 1640.007 kb on - strand, within RS_RS23365at 1640.021 kb on + strand, within RS_RS23365at 1640.127 kb on + strandat 1640.214 kb on - strandat 1640.216 kb on + strandat 1640.217 kb on - strandat 1640.217 kb on - strandat 1640.410 kb on + strandat 1640.411 kb on - strandat 1640.449 kb on + strandat 1640.449 kb on + strandat 1640.449 kb on + strandat 1640.449 kb on + strandat 1640.450 kb on - strandat 1640.513 kb on - strand, within RS_RS23370at 1640.548 kb on + strand, within RS_RS23370at 1640.549 kb on - strand, within RS_RS23370at 1640.549 kb on - strand, within RS_RS23370at 1640.557 kb on + strand, within RS_RS23370at 1640.557 kb on + strand, within RS_RS23370at 1640.557 kb on + strand, within RS_RS23370at 1640.558 kb on - strand, within RS_RS23370at 1640.558 kb on - strand, within RS_RS23370at 1640.578 kb on + strand, within RS_RS23370at 1640.578 kb on + strand, within RS_RS23370at 1640.642 kb on - strand, within RS_RS23370at 1640.938 kb on + strandat 1640.939 kb on - strandat 1640.939 kb on - strandat 1640.939 kb on - strandat 1641.144 kb on + strand, within RS_RS23375at 1641.144 kb on + strand, within RS_RS23375at 1641.144 kb on + strand, within RS_RS23375at 1641.144 kb on + strand, within RS_RS23375at 1641.144 kb on + strand, within RS_RS23375at 1641.144 kb on + strand, within RS_RS23375at 1641.144 kb on + strand, within RS_RS23375at 1641.144 kb on + strand, within RS_RS23375at 1641.144 kb on + strand, within RS_RS23375at 1641.144 kb on + strand, within RS_RS23375at 1641.145 kb on - strand, within RS_RS23375at 1641.145 kb on - strand, within RS_RS23375at 1641.145 kb on - strand, within RS_RS23375at 1641.145 kb on - strand, within RS_RS23375at 1641.145 kb on - strand, within RS_RS23375at 1641.145 kb on - strand, within RS_RS23375at 1641.145 kb on - strand, within RS_RS23375at 1641.145 kb on - strand, within RS_RS23375at 1641.145 kb on - strand, within RS_RS23375at 1641.145 kb on - strand, within RS_RS23375at 1641.156 kb on + strand, within RS_RS23375at 1641.157 kb on - strand, within RS_RS23375at 1641.173 kb on - strand, within RS_RS23375at 1641.183 kb on + strand, within RS_RS23375at 1641.183 kb on + strand, within RS_RS23375at 1641.184 kb on - strand, within RS_RS23375at 1641.184 kb on - strand, within RS_RS23375at 1641.184 kb on - strand, within RS_RS23375at 1641.288 kb on + strand, within RS_RS23375

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,636,267 + +0.5
1,636,267 + +0.5
1,636,268 - -1.3
1,636,665 + RS_RS23360 0.13 -0.2
1,636,665 + RS_RS23360 0.13 +0.1
1,636,665 + RS_RS23360 0.13 -1.3
1,636,666 - RS_RS23360 0.13 -0.7
1,636,666 - RS_RS23360 0.13 -0.3
1,636,666 - RS_RS23360 0.13 -0.9
1,636,770 + RS_RS23360 0.35 -0.6
1,636,770 + RS_RS23360 0.35 -0.2
1,636,770 + RS_RS23360 0.35 -0.1
1,636,771 - RS_RS23360 0.36 +0.1
1,636,780 - RS_RS23360 0.38 -2.0
1,636,780 - RS_RS23360 0.38 -0.1
1,636,780 - RS_RS23360 0.38 -0.0
1,636,782 + RS_RS23360 0.38 -0.3
1,636,782 + RS_RS23360 0.38 +0.3
1,636,783 - RS_RS23360 0.38 -1.7
1,636,783 - RS_RS23360 0.38 -0.3
1,636,857 + RS_RS23360 0.54 -0.1
1,636,857 + RS_RS23360 0.54 -1.1
1,636,857 + RS_RS23360 0.54 -0.2
1,636,879 - RS_RS23360 0.59 -0.4
1,636,879 - RS_RS23360 0.59 -0.9
1,636,947 + RS_RS23360 0.73 +0.3
1,636,947 + RS_RS23360 0.73 +0.3
1,636,947 + RS_RS23360 0.73 +0.7
1,636,948 - RS_RS23360 0.74 +0.6
1,636,948 - RS_RS23360 0.74 +0.2
1,636,948 - RS_RS23360 0.74 -0.9
1,636,948 - RS_RS23360 0.74 -0.3
1,636,948 - RS_RS23360 0.74 +0.1
1,636,957 - RS_RS23360 0.75 -0.5
1,637,252 + +0.3
1,637,253 - -0.6
1,637,253 - -1.1
1,637,333 + +0.5
1,637,429 + RS_RS23365 0.11 -0.8
1,637,429 + RS_RS23365 0.11 -0.6
1,637,429 + RS_RS23365 0.11 -0.4
1,637,430 - RS_RS23365 0.11 +0.1
1,637,430 - RS_RS23365 0.11 -0.1
1,637,430 - RS_RS23365 0.11 -0.0
1,637,430 - RS_RS23365 0.11 +0.0
1,637,430 - RS_RS23365 0.11 +0.7
1,637,430 - RS_RS23365 0.11 -0.4
1,637,444 + RS_RS23365 0.11 -0.5
1,637,445 - RS_RS23365 0.11 -1.9
1,637,445 - RS_RS23365 0.11 +0.1
1,637,661 - RS_RS23365 0.18 +0.2
1,637,661 - RS_RS23365 0.18 +0.2
1,637,721 - RS_RS23365 0.19 -0.1
1,637,745 - RS_RS23365 0.20 +0.3
1,637,745 - RS_RS23365 0.20 -0.5
1,637,972 + RS_RS23365 0.27 +0.6
1,637,973 - RS_RS23365 0.27 +0.2
1,637,973 - RS_RS23365 0.27 -0.3
1,637,973 - RS_RS23365 0.27 +0.2
1,637,978 + RS_RS23365 0.27 +0.9
1,637,979 - RS_RS23365 0.27 -0.4
1,637,979 - RS_RS23365 0.27 +0.3
1,637,979 - RS_RS23365 0.27 -0.1
1,638,020 + RS_RS23365 0.28 -0.4
1,638,020 + RS_RS23365 0.28 +0.1
1,638,021 - RS_RS23365 0.28 +1.0
1,638,021 - RS_RS23365 0.28 -0.4
1,638,086 + RS_RS23365 0.30 +0.2
1,638,089 + RS_RS23365 0.30 +0.0
1,638,225 - RS_RS23365 0.35 +0.6
1,638,229 - RS_RS23365 0.35 -0.7
1,638,229 - RS_RS23365 0.35 +2.3
1,638,229 - RS_RS23365 0.35 +0.5
1,638,239 + RS_RS23365 0.35 +0.2
1,638,276 + RS_RS23365 0.36 -0.1
1,638,277 - RS_RS23365 0.36 -1.5
1,638,356 + RS_RS23365 0.38 -1.2
1,638,356 + RS_RS23365 0.38 +0.0
1,638,356 + RS_RS23365 0.38 -0.3
1,638,357 - RS_RS23365 0.38 +0.3
1,638,357 - RS_RS23365 0.38 -0.7
1,638,458 + RS_RS23365 0.41 -0.1
1,638,458 + RS_RS23365 0.41 +0.1
1,638,458 + RS_RS23365 0.41 +0.1
1,638,459 - RS_RS23365 0.42 -0.9
1,638,459 - RS_RS23365 0.42 +0.3
1,638,461 + RS_RS23365 0.42 +0.3
1,638,495 - RS_RS23365 0.43 -0.4
1,638,578 + RS_RS23365 0.45 -1.7
1,638,578 + RS_RS23365 0.45 +1.9
1,638,578 + RS_RS23365 0.45 -0.8
1,638,579 - RS_RS23365 0.45 -0.3
1,638,579 - RS_RS23365 0.45 +0.4
1,638,579 - RS_RS23365 0.45 +0.0
1,638,579 - RS_RS23365 0.45 +1.1
1,638,645 - RS_RS23365 0.47 -0.4
1,638,692 + RS_RS23365 0.49 +0.6
1,638,692 + RS_RS23365 0.49 -0.1
1,638,692 + RS_RS23365 0.49 -0.3
1,638,693 - RS_RS23365 0.49 +0.8
1,638,693 - RS_RS23365 0.49 +1.3
1,638,693 - RS_RS23365 0.49 -0.3
1,638,717 - RS_RS23365 0.49 -0.5
1,638,717 - RS_RS23365 0.49 -0.6
1,638,737 + RS_RS23365 0.50 -0.0
1,638,737 + RS_RS23365 0.50 -0.3
1,638,737 + RS_RS23365 0.50 +0.2
1,638,737 + RS_RS23365 0.50 -1.5
1,638,738 - RS_RS23365 0.50 +0.3
1,638,801 - RS_RS23365 0.52 -0.1
1,638,801 - RS_RS23365 0.52 +1.2
1,638,875 + RS_RS23365 0.54 -0.6
1,638,920 + RS_RS23365 0.55 +0.3
1,638,921 - RS_RS23365 0.55 -0.5
1,639,217 + RS_RS23365 0.64 +0.4
1,639,217 + RS_RS23365 0.64 -0.3
1,639,217 + RS_RS23365 0.64 -0.6
1,639,218 - RS_RS23365 0.64 +0.1
1,639,220 + RS_RS23365 0.64 +0.5
1,639,220 + RS_RS23365 0.64 +0.8
1,639,220 + RS_RS23365 0.64 -0.8
1,639,457 + RS_RS23365 0.71 -0.3
1,639,499 + RS_RS23365 0.73 +0.7
1,639,499 + RS_RS23365 0.73 +0.4
1,639,499 + RS_RS23365 0.73 -0.5
1,639,500 - RS_RS23365 0.73 -0.2
1,639,500 - RS_RS23365 0.73 -0.3
1,639,500 - RS_RS23365 0.73 -0.2
1,639,586 + RS_RS23365 0.75 -0.1
1,639,586 + RS_RS23365 0.75 -0.6
1,639,586 + RS_RS23365 0.75 +0.3
1,639,587 - RS_RS23365 0.75 -0.1
1,639,587 - RS_RS23365 0.75 -1.1
1,639,592 + RS_RS23365 0.75 +0.6
1,639,592 + RS_RS23365 0.75 +0.1
1,639,592 + RS_RS23365 0.75 -0.1
1,639,593 - RS_RS23365 0.76 +0.1
1,639,593 - RS_RS23365 0.76 +0.5
1,639,593 - RS_RS23365 0.76 +0.3
1,639,599 - RS_RS23365 0.76 +0.3
1,639,649 + RS_RS23365 0.77 +0.1
1,639,650 - RS_RS23365 0.77 +0.0
1,639,718 + RS_RS23365 0.79 -0.5
1,639,719 - RS_RS23365 0.79 -1.4
1,639,721 + RS_RS23365 0.79 -0.5
1,639,722 - RS_RS23365 0.79 -1.3
1,639,730 + RS_RS23365 0.80 +0.5
1,639,866 + RS_RS23365 0.84 +0.3
1,639,867 - RS_RS23365 0.84 +0.6
1,639,868 + RS_RS23365 0.84 +1.0
1,639,889 + RS_RS23365 0.84 +0.4
1,639,889 + RS_RS23365 0.84 +0.6
1,639,889 + RS_RS23365 0.84 +0.6
1,639,889 + RS_RS23365 0.84 -0.5
1,640,006 + RS_RS23365 0.88 -0.1
1,640,006 + RS_RS23365 0.88 -1.1
1,640,007 - RS_RS23365 0.88 -0.4
1,640,007 - RS_RS23365 0.88 -0.5
1,640,021 + RS_RS23365 0.88 -0.9
1,640,127 + +1.0
1,640,214 - -0.2
1,640,216 + -0.9
1,640,217 - -0.3
1,640,217 - +0.2
1,640,410 + +0.9
1,640,411 - +0.1
1,640,449 + +0.1
1,640,449 + -1.3
1,640,449 + -0.5
1,640,449 + -0.0
1,640,450 - +0.2
1,640,513 - RS_RS23370 0.18 +0.9
1,640,548 + RS_RS23370 0.24 +0.3
1,640,549 - RS_RS23370 0.24 +1.0
1,640,549 - RS_RS23370 0.24 +0.2
1,640,557 + RS_RS23370 0.25 +0.4
1,640,557 + RS_RS23370 0.25 -0.3
1,640,557 + RS_RS23370 0.25 +0.2
1,640,558 - RS_RS23370 0.26 +0.6
1,640,558 - RS_RS23370 0.26 +2.7
1,640,578 + RS_RS23370 0.29 +0.7
1,640,578 + RS_RS23370 0.29 +1.0
1,640,642 - RS_RS23370 0.40 +0.8
1,640,938 + -0.9
1,640,939 - -0.5
1,640,939 - -0.3
1,640,939 - -0.3
1,641,144 + RS_RS23375 0.21 -0.6
1,641,144 + RS_RS23375 0.21 -0.4
1,641,144 + RS_RS23375 0.21 -0.7
1,641,144 + RS_RS23375 0.21 +0.1
1,641,144 + RS_RS23375 0.21 +0.4
1,641,144 + RS_RS23375 0.21 -0.3
1,641,144 + RS_RS23375 0.21 +1.3
1,641,144 + RS_RS23375 0.21 +0.1
1,641,144 + RS_RS23375 0.21 +0.5
1,641,144 + RS_RS23375 0.21 -0.5
1,641,145 - RS_RS23375 0.21 +0.0
1,641,145 - RS_RS23375 0.21 +0.8
1,641,145 - RS_RS23375 0.21 +0.2
1,641,145 - RS_RS23375 0.21 -0.4
1,641,145 - RS_RS23375 0.21 -0.3
1,641,145 - RS_RS23375 0.21 +0.1
1,641,145 - RS_RS23375 0.21 -0.2
1,641,145 - RS_RS23375 0.21 -0.4
1,641,145 - RS_RS23375 0.21 -0.0
1,641,145 - RS_RS23375 0.21 +0.1
1,641,156 + RS_RS23375 0.22 -0.7
1,641,157 - RS_RS23375 0.23 +0.3
1,641,173 - RS_RS23375 0.25 +0.6
1,641,183 + RS_RS23375 0.26 -0.3
1,641,183 + RS_RS23375 0.26 -0.7
1,641,184 - RS_RS23375 0.26 +0.1
1,641,184 - RS_RS23375 0.26 +0.3
1,641,184 - RS_RS23375 0.26 +1.1
1,641,288 + RS_RS23375 0.40 -0.7

Or see this region's nucleotide sequence