Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01130

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01125 and RS_RS25275 are separated by 29 nucleotidesRS_RS25275 and RS_RS01130 overlap by 4 nucleotidesRS_RS01130 and RS_RS01135 are separated by 7 nucleotides RS_RS01125: RS_RS01125 - PLP-dependent aminotransferase family protein, at 250,678 to 251,886 _RS01125 RS_RS25275: RS_RS25275 - hypothetical protein, at 251,916 to 252,101 _RS25275 RS_RS01130: RS_RS01130 - membrane protein, at 252,098 to 253,294 _RS01130 RS_RS01135: RS_RS01135 - LysE family translocator, at 253,302 to 253,937 _RS01135 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1at 251.185 kb on + strand, within RS_RS01125at 251.185 kb on + strand, within RS_RS01125at 251.186 kb on - strand, within RS_RS01125at 251.186 kb on - strand, within RS_RS01125at 251.299 kb on + strand, within RS_RS01125at 251.300 kb on - strand, within RS_RS01125at 251.311 kb on + strand, within RS_RS01125at 251.312 kb on - strand, within RS_RS01125at 251.312 kb on - strand, within RS_RS01125at 251.312 kb on - strand, within RS_RS01125at 251.387 kb on - strand, within RS_RS01125at 251.585 kb on - strand, within RS_RS01125at 251.767 kb on + strandat 251.767 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.806 kb on + strandat 251.807 kb on - strandat 251.807 kb on - strandat 251.844 kb on - strandat 252.150 kb on + strandat 252.150 kb on + strandat 252.151 kb on - strandat 252.151 kb on - strandat 252.151 kb on - strandat 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.456 kb on + strand, within RS_RS01130at 252.457 kb on - strand, within RS_RS01130at 252.457 kb on - strand, within RS_RS01130at 252.534 kb on + strand, within RS_RS01130at 252.534 kb on + strand, within RS_RS01130at 252.535 kb on - strand, within RS_RS01130at 252.535 kb on - strand, within RS_RS01130at 252.535 kb on - strand, within RS_RS01130at 252.741 kb on + strand, within RS_RS01130at 252.742 kb on - strand, within RS_RS01130at 252.954 kb on + strand, within RS_RS01130at 252.954 kb on + strand, within RS_RS01130at 252.955 kb on - strand, within RS_RS01130at 252.955 kb on - strand, within RS_RS01130at 252.955 kb on - strand, within RS_RS01130at 253.430 kb on - strand, within RS_RS01135at 253.685 kb on - strand, within RS_RS01135at 253.685 kb on - strand, within RS_RS01135at 253.693 kb on + strand, within RS_RS01135at 253.694 kb on - strand, within RS_RS01135at 253.694 kb on - strand, within RS_RS01135at 253.694 kb on - strand, within RS_RS01135at 253.788 kb on - strand, within RS_RS01135at 253.981 kb on + strandat 253.981 kb on + strandat 253.982 kb on - strandat 253.982 kb on - strandat 253.982 kb on - strandat 253.982 kb on - strandat 253.982 kb on - strandat 254.163 kb on + strandat 254.177 kb on + strandat 254.178 kb on - strandat 254.197 kb on - strandat 254.278 kb on + strandat 254.279 kb on - strandat 254.287 kb on - strandat 254.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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251,185 + RS_RS01125 0.42 +0.0
251,185 + RS_RS01125 0.42 -0.5
251,186 - RS_RS01125 0.42 +0.6
251,186 - RS_RS01125 0.42 +0.3
251,299 + RS_RS01125 0.51 +0.5
251,300 - RS_RS01125 0.51 +0.0
251,311 + RS_RS01125 0.52 -2.1
251,312 - RS_RS01125 0.52 +0.7
251,312 - RS_RS01125 0.52 +0.7
251,312 - RS_RS01125 0.52 -0.9
251,387 - RS_RS01125 0.59 +0.5
251,585 - RS_RS01125 0.75 -0.7
251,767 + -0.8
251,767 + +0.1
251,806 + +0.3
251,806 + +0.2
251,806 + -0.3
251,806 + +0.6
251,806 + +0.3
251,806 + -0.2
251,806 + -0.0
251,807 - +0.1
251,807 - -0.0
251,844 - -0.1
252,150 + +0.6
252,150 + -0.0
252,151 - -0.3
252,151 - +0.1
252,151 - +0.4
252,450 + RS_RS01130 0.29 -0.1
252,450 + RS_RS01130 0.29 +0.4
252,450 + RS_RS01130 0.29 -0.6
252,450 + RS_RS01130 0.29 +1.5
252,450 + RS_RS01130 0.29 -0.3
252,450 + RS_RS01130 0.29 +0.3
252,450 + RS_RS01130 0.29 +1.0
252,450 + RS_RS01130 0.29 +0.3
252,451 - RS_RS01130 0.29 -0.6
252,451 - RS_RS01130 0.29 -0.8
252,451 - RS_RS01130 0.29 -0.1
252,451 - RS_RS01130 0.29 +0.1
252,451 - RS_RS01130 0.29 +1.3
252,451 - RS_RS01130 0.29 -0.1
252,456 + RS_RS01130 0.30 +0.3
252,457 - RS_RS01130 0.30 -0.0
252,457 - RS_RS01130 0.30 +0.1
252,534 + RS_RS01130 0.36 -0.3
252,534 + RS_RS01130 0.36 -1.8
252,535 - RS_RS01130 0.37 -1.0
252,535 - RS_RS01130 0.37 -0.1
252,535 - RS_RS01130 0.37 -0.9
252,741 + RS_RS01130 0.54 -0.4
252,742 - RS_RS01130 0.54 -0.1
252,954 + RS_RS01130 0.72 -0.5
252,954 + RS_RS01130 0.72 -0.5
252,955 - RS_RS01130 0.72 +0.4
252,955 - RS_RS01130 0.72 -0.8
252,955 - RS_RS01130 0.72 -0.4
253,430 - RS_RS01135 0.20 +0.3
253,685 - RS_RS01135 0.60 -0.6
253,685 - RS_RS01135 0.60 +0.1
253,693 + RS_RS01135 0.61 +0.6
253,694 - RS_RS01135 0.62 +0.2
253,694 - RS_RS01135 0.62 +0.3
253,694 - RS_RS01135 0.62 +0.9
253,788 - RS_RS01135 0.76 +0.1
253,981 + +0.1
253,981 + -0.1
253,982 - -0.1
253,982 - +0.4
253,982 - -0.1
253,982 - -0.1
253,982 - -0.1
254,163 + +0.4
254,177 + -1.5
254,178 - -0.1
254,197 - +0.3
254,278 + +0.2
254,279 - +0.1
254,287 - +0.5
254,287 - -0.1

Or see this region's nucleotide sequence