Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16355

Experiment: Growth at pH7 and (C) D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH7 and (C) D-Glucose
3,708,047	+				-1.5
3,708,048	-				-0.5
3,708,048	-				-0.6
3,708,077	+				-2.7
3,708,077	+				-2.6
3,708,084	+				+1.7
3,708,084	+				-1.6
3,708,085	-				-1.3
3,708,085	-				-0.2
3,708,085	-				+2.4
3,708,085	-				-3.0
3,708,085	-				-0.6
3,708,088	+				+1.0
3,708,088	+				+1.8
3,708,089	-				-2.1
3,708,089	-				-2.8
3,708,097	+				+0.1
3,708,097	+				+1.4
3,708,098	-				+4.5
3,708,098	-				+1.5
3,708,099	+				+2.0
3,708,099	+				+0.2
3,708,100	-				-2.6
3,708,101	+				+1.9
3,708,101	+				-1.5
3,708,102	-				+0.0
3,708,110	+				-2.1
3,708,111	-				-1.5
3,708,111	-				+1.0
3,708,111	-				-1.1
3,708,113	-				-2.1
3,708,205	+				+0.4
3,708,205	+				-1.5
3,708,205	+				-3.3
3,708,205	+				+1.4
3,708,206	-				-0.2
3,708,206	-				-0.6
3,708,206	-				+1.1
3,708,206	-				-1.0
3,708,206	-				-2.1
3,708,206	-				+0.4
3,708,240	+				+1.8
3,708,240	+				+1.4
3,708,241	-				+0.6
3,708,251	+				-2.3
3,708,251	+				-2.9
3,708,251	+				-1.0
3,708,251	+				+0.3
3,708,252	-				-1.5
3,708,252	-				+0.8
3,708,252	-				-0.4
3,708,252	-				-1.6
3,708,252	-				+2.7
3,708,252	-				+1.5
3,708,262	+				+2.0
3,708,263	-				-2.1
3,708,371	+		PFLU_RS30865	0.32	-1.5
3,708,385	+		PFLU_RS30865	0.41	+0.2
3,708,386	-		PFLU_RS30865	0.42	-0.6
3,708,387	+		PFLU_RS30865	0.42	-1.6
3,708,387	+		PFLU_RS30865	0.42	+1.6
3,708,387	+		PFLU_RS30865	0.42	-0.6
3,708,388	-		PFLU_RS30865	0.43	-0.6
3,708,388	-		PFLU_RS30865	0.43	+0.4
3,708,425	+		PFLU_RS30865	0.67	+0.8
3,708,425	+		PFLU_RS30865	0.67	-1.0
3,708,426	-		PFLU_RS30865	0.67	-1.5
3,708,426	-		PFLU_RS30865	0.67	-0.2
3,708,546	+				+2.7
3,708,546	+				+0.6
3,708,546	+				-1.2
3,708,547	-				+2.0
3,708,547	-				-1.8
3,708,563	+				-0.6
3,708,603	+				-2.3
3,708,603	+				-1.0
3,708,604	-				+1.9
3,708,621	-				-2.1
3,708,621	-				-1.2
3,708,639	+				-1.5
3,708,640	-				-0.6
3,708,696	-				-2.3
3,708,696	-				+2.9
3,708,848	-				+1.7
3,708,867	-				+0.9
3,708,867	-				-1.2
3,708,867	-				+1.0
3,708,867	-				-2.1
3,708,867	-				+0.4
3,708,867	-				-1.2
3,708,867	-				+0.1
3,708,867	-				+0.1
3,708,867	-				-0.6
3,708,867	-				-3.3
3,708,867	-				+0.4
3,708,867	-				-1.0
3,708,867	-				-0.6
3,708,867	-				-0.8
3,708,867	-				-1.0
3,708,867	-				+0.8
3,708,992	+				-0.7
3,709,022	+				-1.6
3,709,171	+				-2.0
3,709,171	+				+1.0
3,709,171	+				+3.1
3,709,171	+				-0.4
3,709,171	+				-1.8
3,709,172	-				-0.1
3,709,172	-				+1.5
3,709,172	-				-0.6
3,709,172	-				+1.6
3,709,172	-				-1.5
3,709,172	-				-1.0
3,709,220	+				+1.4
3,709,221	-				-0.6
3,709,221	-				-1.2
3,709,221	-				-1.0
3,709,221	-				-2.1
3,709,221	-				-0.2
3,709,221	-				+1.6
3,709,283	+		PFLU_RS16355	0.11	-0.2
3,709,283	+		PFLU_RS16355	0.11	+1.9
3,709,283	+		PFLU_RS16355	0.11	+1.3
3,709,283	+		PFLU_RS16355	0.11	-1.0
3,709,283	+		PFLU_RS16355	0.11	+0.3
3,709,283	+		PFLU_RS16355	0.11	+1.2
3,709,284	-		PFLU_RS16355	0.12	-1.0
3,709,284	-		PFLU_RS16355	0.12	-1.0
3,709,284	-		PFLU_RS16355	0.12	+0.5
3,709,284	-		PFLU_RS16355	0.12	-0.4
3,709,549	+		PFLU_RS16355	0.23	+0.9
3,709,549	+		PFLU_RS16355	0.23	-1.0
3,709,550	-		PFLU_RS16355	0.23	-0.4
3,709,550	-		PFLU_RS16355	0.23	-1.2
3,709,550	-		PFLU_RS16355	0.23	-1.5
3,709,550	-		PFLU_RS16355	0.23	-1.2
3,709,682	+		PFLU_RS16355	0.29	-0.4
3,709,682	+		PFLU_RS16355	0.29	-2.7
3,709,683	-		PFLU_RS16355	0.29	+3.3
3,709,683	-		PFLU_RS16355	0.29	-2.2
3,709,683	-		PFLU_RS16355	0.29	+0.8
3,709,683	-		PFLU_RS16355	0.29	-2.4
3,709,874	+		PFLU_RS16355	0.37	-2.7
3,709,874	+		PFLU_RS16355	0.37	-1.2
3,709,875	-		PFLU_RS16355	0.37	-3.0
3,710,063	+		PFLU_RS16355	0.46	+0.5
3,710,063	+		PFLU_RS16355	0.46	+2.8
3,710,063	+		PFLU_RS16355	0.46	+1.3
3,710,063	+		PFLU_RS16355	0.46	-2.8
3,710,063	+		PFLU_RS16355	0.46	+1.1
3,710,063	+		PFLU_RS16355	0.46	-1.0
3,710,063	+		PFLU_RS16355	0.46	-1.5
3,710,063	+		PFLU_RS16355	0.46	-1.2
3,710,063	+		PFLU_RS16355	0.46	+1.7
3,710,063	+		PFLU_RS16355	0.46	+1.7
3,710,064	-		PFLU_RS16355	0.46	+1.1
3,710,064	-		PFLU_RS16355	0.46	+1.0
3,710,064	-		PFLU_RS16355	0.46	-0.7
3,710,064	-		PFLU_RS16355	0.46	-2.4
3,710,064	-		PFLU_RS16355	0.46	-1.2
3,710,064	-		PFLU_RS16355	0.46	-2.4
3,710,064	-		PFLU_RS16355	0.46	-3.3
3,710,174	+		PFLU_RS16355	0.50	-1.5
3,710,175	-		PFLU_RS16355	0.50	-0.5
3,710,231	+		PFLU_RS16355	0.53	+1.0
3,710,231	+		PFLU_RS16355	0.53	+1.0
3,710,232	-		PFLU_RS16355	0.53	+0.3
3,710,291	+		PFLU_RS16355	0.56	+0.9
3,710,291	+		PFLU_RS16355	0.56	+0.8
3,710,291	+		PFLU_RS16355	0.56	-2.7
3,710,291	+		PFLU_RS16355	0.56	-2.1
3,710,291	+		PFLU_RS16355	0.56	-2.7
3,710,292	-		PFLU_RS16355	0.56	-0.0
3,710,341	+		PFLU_RS16355	0.58	-1.7
3,710,341	+		PFLU_RS16355	0.58	-1.7
3,710,342	-		PFLU_RS16355	0.58	+1.2
3,710,342	-		PFLU_RS16355	0.58	+0.1
3,710,342	-		PFLU_RS16355	0.58	-2.4
3,710,359	-		PFLU_RS16355	0.59	+0.8
3,710,376	+		PFLU_RS16355	0.59	+0.3
3,710,376	+		PFLU_RS16355	0.59	-2.4
3,710,376	+		PFLU_RS16355	0.59	+0.0
3,710,377	-		PFLU_RS16355	0.59	+0.1
3,710,377	-		PFLU_RS16355	0.59	+1.1
3,710,377	-		PFLU_RS16355	0.59	-1.2
3,710,377	-		PFLU_RS16355	0.59	+2.6
3,710,377	-		PFLU_RS16355	0.59	+2.0
3,710,377	-		PFLU_RS16355	0.59	+0.9
3,710,388	+		PFLU_RS16355	0.60	+0.3
3,710,388	+		PFLU_RS16355	0.60	+1.8
3,710,388	+		PFLU_RS16355	0.60	-0.2
3,710,388	+		PFLU_RS16355	0.60	-0.2
3,710,388	+		PFLU_RS16355	0.60	+1.3
3,710,388	+		PFLU_RS16355	0.60	+0.6
3,710,388	+		PFLU_RS16355	0.60	-3.1
3,710,388	+		PFLU_RS16355	0.60	+0.2
3,710,388	+		PFLU_RS16355	0.60	-0.8
3,710,388	+		PFLU_RS16355	0.60	-2.1
3,710,388	+		PFLU_RS16355	0.60	-0.2
3,710,388	+		PFLU_RS16355	0.60	+0.2
3,710,389	-		PFLU_RS16355	0.60	+0.7
3,710,389	-		PFLU_RS16355	0.60	+0.5
3,710,389	-		PFLU_RS16355	0.60	-0.4
3,710,389	-		PFLU_RS16355	0.60	+1.7
3,710,389	-		PFLU_RS16355	0.60	+0.3
3,710,389	-		PFLU_RS16355	0.60	-0.7
3,710,389	-		PFLU_RS16355	0.60	+0.1
3,710,389	-		PFLU_RS16355	0.60	-0.7
3,710,389	-		PFLU_RS16355	0.60	+0.3
3,710,389	-		PFLU_RS16355	0.60	+3.6
3,710,389	-		PFLU_RS16355	0.60	-2.1
3,710,389	-		PFLU_RS16355	0.60	-1.5
3,710,389	-		PFLU_RS16355	0.60	+0.3
3,710,389	-		PFLU_RS16355	0.60	-0.7
3,710,389	-		PFLU_RS16355	0.60	-1.8
3,710,389	-		PFLU_RS16355	0.60	-1.5
3,710,389	-		PFLU_RS16355	0.60	-1.0
3,710,390	+		PFLU_RS16355	0.60	-2.0
3,710,390	+		PFLU_RS16355	0.60	-1.2
3,710,390	+		PFLU_RS16355	0.60	-0.2
3,710,390	+		PFLU_RS16355	0.60	-2.0
3,710,390	+		PFLU_RS16355	0.60	-0.6
3,710,390	+		PFLU_RS16355	0.60	+0.3
3,710,390	+		PFLU_RS16355	0.60	+0.0
3,710,390	+		PFLU_RS16355	0.60	+2.6
3,710,390	+		PFLU_RS16355	0.60	+0.7
3,710,390	+		PFLU_RS16355	0.60	-1.0
3,710,391	-		PFLU_RS16355	0.60	+1.8
3,710,391	-		PFLU_RS16355	0.60	-2.0
3,710,391	-		PFLU_RS16355	0.60	+0.5
3,710,391	-		PFLU_RS16355	0.60	+3.0
3,710,391	-		PFLU_RS16355	0.60	+2.2
3,710,391	-		PFLU_RS16355	0.60	-2.1
3,710,391	-		PFLU_RS16355	0.60	-1.2
3,710,391	-		PFLU_RS16355	0.60	-1.0
3,710,391	-		PFLU_RS16355	0.60	+0.7
3,710,391	-		PFLU_RS16355	0.60	-0.7
3,710,391	-		PFLU_RS16355	0.60	-1.5
3,710,391	-		PFLU_RS16355	0.60	-1.5
3,710,391	-		PFLU_RS16355	0.60	+0.5
3,710,391	-		PFLU_RS16355	0.60	-0.7
3,710,391	-		PFLU_RS16355	0.60	+2.8
3,710,426	+		PFLU_RS16355	0.61	+2.1
3,710,426	+		PFLU_RS16355	0.61	-0.2
3,710,427	-		PFLU_RS16355	0.62	+1.9
3,710,448	+		PFLU_RS16355	0.62	-0.7
3,710,448	+		PFLU_RS16355	0.62	-1.5
3,710,448	+		PFLU_RS16355	0.62	+1.7
3,710,448	+		PFLU_RS16355	0.62	-2.0
3,710,449	-		PFLU_RS16355	0.62	+2.0
3,710,449	-		PFLU_RS16355	0.62	-0.2
3,710,449	-		PFLU_RS16355	0.62	+0.9
3,710,449	-		PFLU_RS16355	0.62	-2.5
3,710,457	+		PFLU_RS16355	0.63	-1.3
3,710,491	-		PFLU_RS16355	0.64	+1.0
3,710,608	+		PFLU_RS16355	0.69	+1.3
3,710,609	-		PFLU_RS16355	0.69	+5.4
3,710,609	-		PFLU_RS16355	0.69	+1.3
3,710,797	+		PFLU_RS16355	0.78	-0.2
3,710,797	+		PFLU_RS16355	0.78	-1.1
3,710,798	-		PFLU_RS16355	0.78	-3.1
3,710,798	-		PFLU_RS16355	0.78	-0.1
3,710,808	+		PFLU_RS16355	0.78	-0.7
3,710,808	+		PFLU_RS16355	0.78	+0.0
3,710,808	+		PFLU_RS16355	0.78	-2.6
3,710,808	+		PFLU_RS16355	0.78	+1.3
3,710,809	-		PFLU_RS16355	0.78	-1.5
3,710,809	-		PFLU_RS16355	0.78	+1.3
3,710,904	-		PFLU_RS16355	0.82	-1.5
3,710,915	+		PFLU_RS16355	0.83	-1.2
3,710,915	+		PFLU_RS16355	0.83	-2.1
3,710,915	+		PFLU_RS16355	0.83	+0.5
3,710,915	+		PFLU_RS16355	0.83	-1.0
3,710,915	+		PFLU_RS16355	0.83	-0.7
3,710,915	+		PFLU_RS16355	0.83	-2.2
3,710,915	+		PFLU_RS16355	0.83	-2.0
3,710,915	+		PFLU_RS16355	0.83	+1.1
3,710,915	+		PFLU_RS16355	0.83	+1.7
3,710,915	+		PFLU_RS16355	0.83	-2.1
3,710,915	+		PFLU_RS16355	0.83	+0.9
3,710,915	+		PFLU_RS16355	0.83	-1.2
3,710,915	+		PFLU_RS16355	0.83	-2.0
3,710,915	+		PFLU_RS16355	0.83	+2.1
3,710,916	-		PFLU_RS16355	0.83	+0.3
3,710,916	-		PFLU_RS16355	0.83	+1.3
3,710,916	-		PFLU_RS16355	0.83	+0.6
3,710,916	-		PFLU_RS16355	0.83	-2.6
3,710,916	-		PFLU_RS16355	0.83	+1.6
3,710,916	-		PFLU_RS16355	0.83	-0.7
3,710,925	+		PFLU_RS16355	0.83	+1.7
3,711,122	+				-0.2
3,711,123	-				-1.2
3,711,128	+				-0.7
3,711,185	+				+1.7
3,711,185	+				+1.5
3,711,185	+				+2.0
3,711,185	+				+2.9
3,711,186	-				+1.9
3,711,186	-				+2.3
3,711,192	+				+0.3
3,711,300	+				+3.3
3,711,300	+				-1.0
3,711,301	-				+1.7
3,711,359	+				-1.0
3,711,359	+				+1.5
3,711,359	+				+1.0
3,711,360	-				-2.0
3,711,360	-				+1.5
3,711,360	-				+1.3
3,711,386	+				-0.4
3,711,387	-				-1.0
3,711,403	+				-0.1
3,711,403	+				+0.3
3,711,403	+				-1.1
3,711,403	+				-1.2
3,711,403	+				+0.5
3,711,403	+				+2.9
3,711,403	+				-0.2
3,711,403	+				-2.1
3,711,403	+				+0.2
3,711,403	+				-0.3
3,711,403	+				+0.1
3,711,403	+				+0.9
3,711,404	-				-2.1
3,711,404	-				-0.7
3,711,404	-				-1.8
3,711,404	-				+1.9
3,711,404	-				-1.0
3,711,404	-				+3.3
3,711,404	-				+2.9
3,711,450	+				+0.3
3,711,450	+				+0.6
3,711,450	+				-0.5
3,711,451	-				-2.1
3,711,451	-				-1.7
3,711,451	-				-2.4
3,711,489	+				+0.2
3,711,489	+				+1.1
3,711,489	+				+1.9
3,711,489	+				+0.5
3,711,489	+				-2.8
3,711,490	-				-0.1
3,711,490	-				+2.5
3,711,490	-				+0.8
3,711,490	-				-0.6
3,711,490	-				-2.4
3,711,490	-				-2.0
3,711,490	-				-2.4
3,711,492	+				+1.3
3,711,492	+				-0.7
3,711,492	+				+1.2
3,711,492	+				+2.0
3,711,492	+				+0.5
3,711,493	-				+3.3
3,711,493	-				-1.2
3,711,493	-				-0.2
3,711,493	-				+0.5
3,711,496	+				-2.4
3,711,496	+				-1.2
3,711,496	+				-1.0
3,711,496	+				+2.6
3,711,496	+				+0.2
3,711,496	+				+1.7
3,711,496	+				-1.7
3,711,496	+				+1.0
3,711,497	-				+1.0
3,711,497	-				-1.0
3,711,497	-				-2.6
3,711,497	-				+0.1
3,711,497	-				+0.3
3,711,497	-				+2.8
3,711,497	-				+1.3
3,711,497	-				-2.0
3,711,497	-				+3.0
3,711,497	-				+1.0
3,711,547	+				-0.7
3,711,547	+				-2.1
3,711,547	+				+0.9
3,711,547	+				+2.9
3,711,547	+				-0.2
3,711,547	+				-1.7
3,711,547	+				-0.7
3,711,547	+				+0.3
3,711,547	+				-0.2
3,711,547	+				+0.5
3,711,548	-				-1.8
3,711,548	-				-1.5
3,711,548	-				+1.2
3,711,548	-				+2.0
3,711,548	-				-0.2
3,711,548	-				+1.8
3,711,548	-				-0.2
3,711,609	+		PFLU_RS16360	0.17	-3.4
3,711,609	+		PFLU_RS16360	0.17	-2.0
3,711,609	+		PFLU_RS16360	0.17	-0.7
3,711,767	+		PFLU_RS16360	0.59	-1.2
3,711,768	-		PFLU_RS16360	0.59	+0.5
3,711,779	+		PFLU_RS16360	0.62	+1.5
3,711,779	+		PFLU_RS16360	0.62	-0.6
3,711,779	+		PFLU_RS16360	0.62	-0.2
3,711,780	-		PFLU_RS16360	0.62	+0.6
3,711,780	-		PFLU_RS16360	0.62	-2.0
3,711,780	-		PFLU_RS16360	0.62	+0.3
3,711,780	-		PFLU_RS16360	0.62	+0.1
3,711,780	-		PFLU_RS16360	0.62	-1.5
3,711,780	-		PFLU_RS16360	0.62	+3.5
3,711,783	-		PFLU_RS16360	0.63	-2.0
3,711,783	-		PFLU_RS16360	0.63	+0.7
3,711,783	-		PFLU_RS16360	0.63	+0.6
3,711,878	-		PFLU_RS16360	0.88	-1.8
3,711,878	-		PFLU_RS16360	0.88	-1.5
3,711,878	-		PFLU_RS16360	0.88	+2.3
3,711,905	+				-1.8
3,711,905	+				-1.6
3,711,905	+				-1.5
3,711,906	-				-1.0
3,711,941	+				-0.6
3,711,941	+				+2.2
3,711,941	+				+0.5
3,711,941	+				-2.1
3,711,941	+				-0.1
3,711,942	-				-0.3
3,711,942	-				-0.6
3,712,032	+		PFLU_RS16365	0.49	+0.4
3,712,052	+		PFLU_RS16365	0.59	-0.6
3,712,053	-		PFLU_RS16365	0.60	+1.2
3,712,053	-		PFLU_RS16365	0.60	-2.6
3,712,053	-		PFLU_RS16365	0.60	-1.2
3,712,053	-		PFLU_RS16365	0.60	-2.8
3,712,053	-		PFLU_RS16365	0.60	-2.3
3,712,053	-		PFLU_RS16365	0.60	+1.2
3,712,053	-		PFLU_RS16365	0.60	-1.2
3,712,103	+		PFLU_RS16365	0.86	-0.7
3,712,103	+		PFLU_RS16365	0.86	-1.2
3,712,104	-		PFLU_RS16365	0.87	+1.1
3,712,104	-		PFLU_RS16365	0.87	-2.6
3,712,152	+				+0.1
3,712,153	-				-0.0
3,712,153	-				+0.6
3,712,153	-				-0.1
3,712,188	+				-2.0
3,712,215	+				+1.6
3,712,215	+				+1.1
3,712,215	+				+0.9
3,712,215	+				-0.2
3,712,215	+				-0.6
3,712,215	+				-2.2
3,712,215	+				-0.3
3,712,216	-				+1.9
3,712,216	-				+1.4
3,712,216	-				-2.1
3,712,216	-				+3.0
3,712,216	-				-1.2
3,712,216	-				+0.4
3,712,220	+				+2.6
3,712,220	+				-2.6
3,712,220	+				+0.8
3,712,220	+				-1.0
3,712,221	-				+2.9
3,712,221	-				-0.3