Experiment: Growth at pH7 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS05580 and PFLU_RS05585 are separated by 228 nucleotides PFLU_RS05585 and PFLU_RS05590 overlap by 8 nucleotides
PFLU_RS05580: PFLU_RS05580 - MipA/OmpV family protein, at 1,258,645 to 1,259,415
_RS05580
PFLU_RS05585: PFLU_RS05585 - MtnX-like HAD-IB family phosphatase, at 1,259,644 to 1,260,348
_RS05585
PFLU_RS05590: PFLU_RS05590 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 1,260,341 to 1,261,735
_RS05590
Position (kb) 1259
1260
1261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1258.656 kb on + strand at 1258.656 kb on + strand at 1258.656 kb on + strand at 1258.656 kb on + strand at 1258.656 kb on + strand at 1258.656 kb on + strand at 1258.656 kb on + strand at 1258.656 kb on + strand at 1258.656 kb on + strand at 1258.656 kb on + strand at 1258.657 kb on - strand at 1258.657 kb on - strand at 1258.657 kb on - strand at 1258.657 kb on - strand at 1258.657 kb on - strand at 1258.657 kb on - strand at 1258.658 kb on + strand at 1258.658 kb on + strand at 1258.658 kb on + strand at 1258.658 kb on + strand at 1258.658 kb on + strand at 1258.658 kb on + strand at 1258.658 kb on + strand at 1258.658 kb on + strand at 1258.658 kb on + strand at 1258.658 kb on + strand at 1258.658 kb on + strand at 1258.659 kb on - strand at 1258.659 kb on - strand at 1258.659 kb on - strand at 1258.659 kb on - strand at 1258.659 kb on - strand at 1258.659 kb on - strand at 1258.659 kb on - strand at 1258.735 kb on + strand, within PFLU_RS05580 at 1258.736 kb on - strand, within PFLU_RS05580 at 1258.841 kb on + strand, within PFLU_RS05580 at 1258.841 kb on + strand, within PFLU_RS05580 at 1258.842 kb on - strand, within PFLU_RS05580 at 1258.842 kb on - strand, within PFLU_RS05580 at 1259.042 kb on + strand, within PFLU_RS05580 at 1259.042 kb on + strand, within PFLU_RS05580 at 1259.043 kb on - strand, within PFLU_RS05580 at 1259.043 kb on - strand, within PFLU_RS05580 at 1259.043 kb on - strand, within PFLU_RS05580 at 1259.070 kb on - strand, within PFLU_RS05580 at 1259.070 kb on - strand, within PFLU_RS05580 at 1259.077 kb on - strand, within PFLU_RS05580 at 1259.077 kb on - strand, within PFLU_RS05580 at 1259.077 kb on - strand, within PFLU_RS05580 at 1259.153 kb on + strand, within PFLU_RS05580 at 1259.153 kb on + strand, within PFLU_RS05580 at 1259.153 kb on + strand, within PFLU_RS05580 at 1259.153 kb on + strand, within PFLU_RS05580 at 1259.153 kb on + strand, within PFLU_RS05580 at 1259.153 kb on + strand, within PFLU_RS05580 at 1259.153 kb on + strand, within PFLU_RS05580 at 1259.154 kb on - strand, within PFLU_RS05580 at 1259.154 kb on - strand, within PFLU_RS05580 at 1259.154 kb on - strand, within PFLU_RS05580 at 1259.154 kb on - strand, within PFLU_RS05580 at 1259.160 kb on + strand, within PFLU_RS05580 at 1259.161 kb on - strand, within PFLU_RS05580 at 1259.162 kb on + strand, within PFLU_RS05580 at 1259.162 kb on + strand, within PFLU_RS05580 at 1259.162 kb on + strand, within PFLU_RS05580 at 1259.162 kb on + strand, within PFLU_RS05580 at 1259.162 kb on + strand, within PFLU_RS05580 at 1259.163 kb on - strand, within PFLU_RS05580 at 1259.163 kb on - strand, within PFLU_RS05580 at 1259.163 kb on - strand, within PFLU_RS05580 at 1259.221 kb on - strand, within PFLU_RS05580 at 1259.221 kb on - strand, within PFLU_RS05580 at 1259.256 kb on - strand, within PFLU_RS05580 at 1259.306 kb on + strand, within PFLU_RS05580 at 1259.306 kb on + strand, within PFLU_RS05580 at 1259.306 kb on + strand, within PFLU_RS05580 at 1259.307 kb on - strand, within PFLU_RS05580 at 1259.307 kb on - strand, within PFLU_RS05580 at 1259.307 kb on - strand, within PFLU_RS05580 at 1259.380 kb on + strand at 1259.380 kb on + strand at 1259.381 kb on - strand at 1259.381 kb on - strand at 1259.381 kb on - strand at 1259.437 kb on + strand at 1259.437 kb on + strand at 1259.437 kb on + strand at 1259.437 kb on + strand at 1259.437 kb on + strand at 1259.437 kb on + strand at 1259.438 kb on - strand at 1259.438 kb on - strand at 1259.438 kb on - strand at 1259.438 kb on - strand at 1259.438 kb on - strand at 1259.492 kb on + strand at 1259.492 kb on + strand at 1259.492 kb on + strand at 1259.501 kb on - strand at 1259.512 kb on - strand at 1259.518 kb on + strand at 1259.635 kb on + strand at 1259.635 kb on + strand at 1259.635 kb on + strand at 1259.635 kb on + strand at 1259.636 kb on - strand at 1259.636 kb on - strand at 1259.636 kb on - strand at 1259.636 kb on - strand at 1259.636 kb on - strand at 1259.659 kb on - strand at 1259.659 kb on - strand at 1259.659 kb on - strand at 1259.659 kb on - strand at 1259.842 kb on + strand, within PFLU_RS05585 at 1259.971 kb on + strand, within PFLU_RS05585 at 1259.971 kb on + strand, within PFLU_RS05585 at 1259.971 kb on + strand, within PFLU_RS05585 at 1259.971 kb on + strand, within PFLU_RS05585 at 1259.971 kb on + strand, within PFLU_RS05585 at 1259.971 kb on + strand, within PFLU_RS05585 at 1259.971 kb on + strand, within PFLU_RS05585 at 1259.971 kb on + strand, within PFLU_RS05585 at 1259.971 kb on + strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1259.972 kb on - strand, within PFLU_RS05585 at 1260.199 kb on + strand, within PFLU_RS05585 at 1260.200 kb on - strand, within PFLU_RS05585 at 1260.401 kb on + strand at 1260.401 kb on + strand at 1260.401 kb on + strand at 1260.401 kb on + strand at 1260.402 kb on - strand at 1260.402 kb on - strand at 1260.402 kb on - strand at 1260.402 kb on - strand at 1260.428 kb on + strand at 1260.428 kb on + strand at 1260.428 kb on + strand at 1260.428 kb on + strand at 1260.429 kb on - strand at 1260.429 kb on - strand at 1260.445 kb on + strand at 1260.446 kb on - strand at 1260.446 kb on - strand at 1260.446 kb on - strand at 1260.446 kb on - strand at 1260.446 kb on - strand at 1260.470 kb on + strand at 1260.470 kb on + strand at 1260.470 kb on + strand at 1260.470 kb on + strand at 1260.470 kb on + strand at 1260.470 kb on + strand at 1260.470 kb on + strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.471 kb on - strand at 1260.474 kb on + strand at 1260.474 kb on + strand at 1260.474 kb on + strand at 1260.474 kb on + strand at 1260.475 kb on - strand at 1260.475 kb on - strand at 1260.475 kb on - strand at 1260.475 kb on - strand at 1260.475 kb on - strand at 1260.498 kb on - strand, within PFLU_RS05590 at 1260.498 kb on - strand, within PFLU_RS05590 at 1260.608 kb on + strand, within PFLU_RS05590 at 1260.608 kb on + strand, within PFLU_RS05590 at 1260.608 kb on + strand, within PFLU_RS05590 at 1260.800 kb on - strand, within PFLU_RS05590 at 1260.929 kb on + strand, within PFLU_RS05590 at 1260.929 kb on + strand, within PFLU_RS05590 at 1260.930 kb on - strand, within PFLU_RS05590 at 1260.930 kb on - strand, within PFLU_RS05590 at 1260.930 kb on - strand, within PFLU_RS05590 at 1260.977 kb on + strand, within PFLU_RS05590 at 1260.977 kb on + strand, within PFLU_RS05590 at 1260.977 kb on + strand, within PFLU_RS05590 at 1260.977 kb on + strand, within PFLU_RS05590 at 1260.977 kb on + strand, within PFLU_RS05590 at 1260.977 kb on + strand, within PFLU_RS05590 at 1260.977 kb on + strand, within PFLU_RS05590 at 1260.977 kb on + strand, within PFLU_RS05590 at 1261.017 kb on - strand, within PFLU_RS05590 at 1261.017 kb on - strand, within PFLU_RS05590 at 1261.028 kb on + strand, within PFLU_RS05590 at 1261.059 kb on - strand, within PFLU_RS05590 at 1261.154 kb on + strand, within PFLU_RS05590
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose remove 1,258,656 + -1.2 1,258,656 + +0.9 1,258,656 + +2.8 1,258,656 + +0.4 1,258,656 + -1.8 1,258,656 + +0.1 1,258,656 + -1.8 1,258,656 + -0.8 1,258,656 + +1.5 1,258,656 + +1.3 1,258,657 - +2.2 1,258,657 - -1.0 1,258,657 - +1.7 1,258,657 - +1.9 1,258,657 - +0.2 1,258,657 - +1.2 1,258,658 + -0.9 1,258,658 + -0.3 1,258,658 + -1.8 1,258,658 + +0.5 1,258,658 + -2.2 1,258,658 + +0.4 1,258,658 + +0.3 1,258,658 + -1.4 1,258,658 + -1.8 1,258,658 + -1.2 1,258,658 + +0.2 1,258,659 - -0.7 1,258,659 - +2.8 1,258,659 - +1.4 1,258,659 - +0.2 1,258,659 - +1.9 1,258,659 - +0.5 1,258,659 - -0.4 1,258,735 + PFLU_RS05580 0.12 +0.6 1,258,736 - PFLU_RS05580 0.12 -1.2 1,258,841 + PFLU_RS05580 0.25 +1.0 1,258,841 + PFLU_RS05580 0.25 -1.4 1,258,842 - PFLU_RS05580 0.26 -0.4 1,258,842 - PFLU_RS05580 0.26 -1.8 1,259,042 + PFLU_RS05580 0.51 -1.5 1,259,042 + PFLU_RS05580 0.51 -2.2 1,259,043 - PFLU_RS05580 0.52 -3.0 1,259,043 - PFLU_RS05580 0.52 +1.7 1,259,043 - PFLU_RS05580 0.52 -2.0 1,259,070 - PFLU_RS05580 0.55 +2.2 1,259,070 - PFLU_RS05580 0.55 -2.5 1,259,077 - PFLU_RS05580 0.56 -0.3 1,259,077 - PFLU_RS05580 0.56 +0.2 1,259,077 - PFLU_RS05580 0.56 +1.4 1,259,153 + PFLU_RS05580 0.66 +1.0 1,259,153 + PFLU_RS05580 0.66 +1.1 1,259,153 + PFLU_RS05580 0.66 +1.4 1,259,153 + PFLU_RS05580 0.66 -1.5 1,259,153 + PFLU_RS05580 0.66 -1.0 1,259,153 + PFLU_RS05580 0.66 -0.2 1,259,153 + PFLU_RS05580 0.66 +1.5 1,259,154 - PFLU_RS05580 0.66 +1.2 1,259,154 - PFLU_RS05580 0.66 -1.2 1,259,154 - PFLU_RS05580 0.66 -1.8 1,259,154 - PFLU_RS05580 0.66 +0.5 1,259,160 + PFLU_RS05580 0.67 -2.2 1,259,161 - PFLU_RS05580 0.67 -0.5 1,259,162 + PFLU_RS05580 0.67 -1.8 1,259,162 + PFLU_RS05580 0.67 -1.5 1,259,162 + PFLU_RS05580 0.67 +0.5 1,259,162 + PFLU_RS05580 0.67 -1.7 1,259,162 + PFLU_RS05580 0.67 +0.6 1,259,163 - PFLU_RS05580 0.67 -0.7 1,259,163 - PFLU_RS05580 0.67 +0.2 1,259,163 - PFLU_RS05580 0.67 +0.8 1,259,221 - PFLU_RS05580 0.75 -1.8 1,259,221 - PFLU_RS05580 0.75 +0.2 1,259,256 - PFLU_RS05580 0.79 +2.0 1,259,306 + PFLU_RS05580 0.86 +1.7 1,259,306 + PFLU_RS05580 0.86 -0.8 1,259,306 + PFLU_RS05580 0.86 -0.4 1,259,307 - PFLU_RS05580 0.86 -1.8 1,259,307 - PFLU_RS05580 0.86 +0.8 1,259,307 - PFLU_RS05580 0.86 -2.0 1,259,380 + -1.4 1,259,380 + -1.3 1,259,381 - -2.2 1,259,381 - +1.9 1,259,381 - +1.1 1,259,437 + +1.3 1,259,437 + +1.5 1,259,437 + -2.3 1,259,437 + +0.1 1,259,437 + -1.4 1,259,437 + +1.3 1,259,438 - +4.0 1,259,438 - -2.4 1,259,438 - +0.4 1,259,438 - -1.5 1,259,438 - -0.0 1,259,492 + -1.4 1,259,492 + -1.4 1,259,492 + +1.0 1,259,501 - -0.7 1,259,512 - -2.1 1,259,518 + +0.2 1,259,635 + +1.9 1,259,635 + -1.7 1,259,635 + -2.8 1,259,635 + +0.8 1,259,636 - +0.9 1,259,636 - -2.4 1,259,636 - +1.7 1,259,636 - +2.3 1,259,636 - +1.3 1,259,659 - +0.2 1,259,659 - -1.5 1,259,659 - -1.3 1,259,659 - +0.6 1,259,842 + PFLU_RS05585 0.28 -1.2 1,259,971 + PFLU_RS05585 0.46 -2.0 1,259,971 + PFLU_RS05585 0.46 +0.2 1,259,971 + PFLU_RS05585 0.46 +1.9 1,259,971 + PFLU_RS05585 0.46 +0.2 1,259,971 + PFLU_RS05585 0.46 -0.4 1,259,971 + PFLU_RS05585 0.46 -1.5 1,259,971 + PFLU_RS05585 0.46 +2.4 1,259,971 + PFLU_RS05585 0.46 -2.4 1,259,971 + PFLU_RS05585 0.46 -1.0 1,259,972 - PFLU_RS05585 0.47 +0.6 1,259,972 - PFLU_RS05585 0.47 -2.5 1,259,972 - PFLU_RS05585 0.47 -1.8 1,259,972 - PFLU_RS05585 0.47 -1.2 1,259,972 - PFLU_RS05585 0.47 -0.4 1,259,972 - PFLU_RS05585 0.47 -2.3 1,259,972 - PFLU_RS05585 0.47 +1.2 1,259,972 - PFLU_RS05585 0.47 -1.7 1,259,972 - PFLU_RS05585 0.47 -1.9 1,259,972 - PFLU_RS05585 0.47 -0.2 1,259,972 - PFLU_RS05585 0.47 -1.0 1,259,972 - PFLU_RS05585 0.47 +0.2 1,260,199 + PFLU_RS05585 0.79 -2.4 1,260,200 - PFLU_RS05585 0.79 +1.6 1,260,401 + -1.4 1,260,401 + -0.8 1,260,401 + -1.7 1,260,401 + -0.8 1,260,402 - -0.7 1,260,402 - -2.1 1,260,402 - +0.2 1,260,402 - +0.9 1,260,428 + -0.4 1,260,428 + +3.2 1,260,428 + -1.0 1,260,428 + +0.6 1,260,429 - +0.5 1,260,429 - -1.0 1,260,445 + -2.8 1,260,446 - -0.2 1,260,446 - -0.8 1,260,446 - +0.2 1,260,446 - -1.8 1,260,446 - +0.8 1,260,470 + -0.7 1,260,470 + -0.7 1,260,470 + +1.0 1,260,470 + -1.2 1,260,470 + -2.1 1,260,470 + -2.1 1,260,470 + -0.7 1,260,471 - +0.3 1,260,471 - +1.4 1,260,471 - -2.8 1,260,471 - -3.1 1,260,471 - -1.5 1,260,471 - -0.2 1,260,471 - +2.0 1,260,471 - -2.2 1,260,471 - -0.4 1,260,471 - -0.4 1,260,471 - +0.9 1,260,471 - +1.2 1,260,471 - -1.3 1,260,471 - -0.1 1,260,474 + +1.4 1,260,474 + +0.3 1,260,474 + -3.0 1,260,474 + +0.9 1,260,475 - -2.3 1,260,475 - -1.4 1,260,475 - -2.0 1,260,475 - -1.9 1,260,475 - +1.6 1,260,498 - PFLU_RS05590 0.11 +0.8 1,260,498 - PFLU_RS05590 0.11 -1.4 1,260,608 + PFLU_RS05590 0.19 -1.3 1,260,608 + PFLU_RS05590 0.19 +1.0 1,260,608 + PFLU_RS05590 0.19 -0.7 1,260,800 - PFLU_RS05590 0.33 -1.4 1,260,929 + PFLU_RS05590 0.42 -3.1 1,260,929 + PFLU_RS05590 0.42 -1.2 1,260,930 - PFLU_RS05590 0.42 -1.5 1,260,930 - PFLU_RS05590 0.42 -1.8 1,260,930 - PFLU_RS05590 0.42 +0.6 1,260,977 + PFLU_RS05590 0.46 +0.0 1,260,977 + PFLU_RS05590 0.46 +1.5 1,260,977 + PFLU_RS05590 0.46 -1.7 1,260,977 + PFLU_RS05590 0.46 +1.2 1,260,977 + PFLU_RS05590 0.46 -0.8 1,260,977 + PFLU_RS05590 0.46 -1.0 1,260,977 + PFLU_RS05590 0.46 +1.0 1,260,977 + PFLU_RS05590 0.46 -1.8 1,261,017 - PFLU_RS05590 0.48 -1.7 1,261,017 - PFLU_RS05590 0.48 -1.8 1,261,028 + PFLU_RS05590 0.49 -0.6 1,261,059 - PFLU_RS05590 0.51 +0.2 1,261,154 + PFLU_RS05590 0.58 +0.2
Or see this region's nucleotide sequence